Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02613 ATGTCGACGTGGCAGTTATTCTCCGACGCCGACAACAATTACCGGTGGCAAATCAACTCCGTCTCCGACGACACTTCAAATCTTATCACACCTCCCACTCCTCCCACTCCTCCTATTCCCACCCCTCCCCTTCCCTCTATGTACAATCTTCTCTTACATGCTTCCACTTCACACCTTTTCCAACCTCAAGAGGATGAAAATGCGATGGATGATAGCTTTGGTTTCTCGAATTCGCTTTTCAAGACAGGTTCTGGAAGAAAAGTTACTATTTCCCCTAATGGTATTGTTAGAGCAAAGACTTTACTTGGATTAGGTTTGAATGATGAAATTGTAGGTAGTGATATTCAAACCCCTCTAAATGTTAACAAATTTCGTGGTTTTGATGATGAATCGCCTCATTTAAAGGTTATTGATAGTTGTAAAAAATCGAGTTGTGTGTCGTTTCAAAGTCCTTTGGTTAGTAGATTGAGGAAAGGTTGTGAGGATAAAATTGTGCAACCAGATAGTGGTAGTAGTGTTAGTGGTGCTAGTGGTGCTAAGCATGCTCCGGTTAAATTCCAAACTGTTGTTGGTAATATTCAAACCCCTCAGAATTCTAAAAAGTTTAATGTTTTTGATGAAGAATCACAGTATTTACAGCGTATGGATAGTTGCAAAACGACGAGTGCTGTTCCGTTTCAAAGTCCTTTAGTTGGTAGATTAAAGAAtgattttgagaataaaatcgGGCAACCTGATAATGGTAGTGGTAGTAATATTCAAACCCCTCAGaatgttaaaaagtttaatgTGTTTGATGAAGAATCACCTCATTTACAGCTTATGGACAGTTGCGAAACGAAGAGTGTTGTGTCGTTTCAAAGTCCTTTAGTTGGTAGATTAAAAAACGGTTTTGAGAGTAAAATTGTGCAACCAGATAGTGGCAGTGTTGGTTGTGCTAAGCAAGTTCCGAGTAAATTCCAAACTATTGGTAATATTCAAACCCCTCAGAATGTTACAAAATTTAATGCGTTTGATGAAGAATCACCCCATTTACAGCTCATGGATAGTTGCAAAACGACGAGTGTTGTGTCGTTTCAAAGTCCTATAATTGGTAGATTGAAGAACGGTTTTGAGAGGACAAGTGTACAGCCAGATAGTGGATTAGGTGGTGGTGCTAAGCAATCTCCAATTAAATTCCAAACTGCAGGGGGAAGGTCATTATCCATTTCTGGTGATGCGCTGAAACGCGCTAGGAGCCTTCTTGGTGACCCTGATTTAGGAGATTTCTTTGATGGAGGGGATTCACTTTTCTCGTTTCCGGATAAGAGCGAAACCAATACAATCACCTCCTCTGTTGAAAGAAGTGAGAGTAATAATACTCATACTACTTTGCTCCATCAAATGACACCAGAGAGCAATCACAATCACATGAAAAAACGTTTCACATACCCTTTGCAGCCTTCTAAACAAATGGAATTTTCAAATAAGCTTCCCCATGAAGGCAATGGGAATAACTTAATCATGAAATTTGATGATGCTGTGAATGAAAGTGATTGTGGCCGTAAAAGTAGCAACACTCCTGGACAGAAACCCTTGTATAACAAGAATGATGTGGTTAACTCGACAATGAAAAGTTCTTCATTGAATGGTTTTTCTTCAAGAATGGATTCACGTGGAAAGGCTTTGGGCAGGGCATTGGTTGATATTTCCAACACCATTACCACAGTTGATTCAAACAATAAACAACCTTCCAGTGGGAAAAGGAGACTAGGATTAAATGCAACTGTTTCTTCCTTCAAAAGGCCTCGCATTTCCCATATCTCTGCCTCTGGTGACCAAGGTGTTCAAAAGTTTCCTAATGATTTGTCTCAATTATCATCTGGTGCTTCTGGATGCAAAAGAAAGGTTTCTACCCGATACCCATTTCGGTATCCAAAGATGCACATCAAGGAATTTTTCGTAGTTCCTCCATTAGAACAAAAACTGCATTTTCCCAACCAAGTCATACAGGTGACATCAGGTAATGCAGGAAAGTACATATTCAATGATGGGTCTGATGATAGTGGTATGGGAGCAGAAGCTTTCGCCCATCTGTTGGCACAGCACGGAGCTTCCCTTAATTTTGCTTCAAAAGAGTGGGTTTTGAATCATTACAAGTGGATTGTTTGGAAACTGGCATGCTATGAGAGATGCTATCCAGCTAGATGTGCTGGAAAATTTCTGACTGTATCAAATGTGCTTGAGGAACTGAAGTACAGatatgaaagagaaGTGAATCATGGCCACCGGTCTACCATCAAGAAAATTCTCGAAGGGGATGGATTGCCTTCTTCAATGATGACTCTCTGCATATCTAGCATTCACTCTGATCATGTACTTGAAAGCGGGACATTAATTGAGGCACAAACCGGGAATCAGAGCACGGAAGCAGTAAAAGTTGAACTAACTGATGGATGGTATTCTATAAATGCCATTTTAGATGTTCCATTGTCAAAGCAACTGGCTGCTGGAAGATTGTTTGTAGGACAAAAGCTTCGGATCTGGGGAGCAGGATTATGTGGCTGGAATGGGCCAGTTTCACCCCTTGAGGTGTCATCAACAGTTAGTTTATTTCTTCACATGAATGGAACATATAGAGCTCATTGGGCTGATCAGTTAGGATTTTGTAAAGTTGCTGGTCCACCTTTGGCTTTTAAATGCATAAAAAGCAATGGCGGTTTAGTACCTCAAACTTTGGCAGGAATTACCCGCATATATCCCATTCTTTACAAAGAAAGGTTAAGCAGTGGACGATCTGTTGTCATATCAGAGAGGATGGAGGATAAAATGATGGAGCTTCACAATCAAAGACGCTCAGCTATTGTAGATAACATTGTTTCGGAGTATCAGAAGGAAAGAACGGGTTCGCATATTTATGATTACGGCGATAGTGAAGGGGCTAAGATTTATAAGATGTTGGAGACAGCTGCAGAACCCGAATTCCTAATGGCAGATATGAGTCCGGAGCAACTTAATTCTTTTGCTGCTTATAAGGCCAAATTAAATGCAACCAGACAGTTACAAATGGAAAGTTCAATTGAGAAAGCTTTGAAAGATTCTGGCTTGGGAAACAGAGAAGTAACACCATTTATGAGGTTACGGGTAGTTGGATTAACATATAAAACTCGACGAGAGAAGCCTAAAGAAGGCATAGTAACAATCTGGAATCCAACACAGAAGCAGCGTCAGGAGCTGGTAGAGGGAGAAGCATATGCAATTGCAGGACTCACACCATCAGGCTCCGATTCGGATGTTCTTCACTTACAGACTAGAGGATCTACTACCAAGTGGTTGCCATTATCTTCTAATGCAAAGGAACAGTTTAAGCCATTTTTCAGTAGTCGGAAATCAATCCCATTGTCCAGTTTGAGTGACATCCCTCTTTCCAATGAGTTCGATGTTGTTGCATTTGTTGTGCATGTGGGAGAGGTTTATACATCAAATCAGCAAAAGAAACAATGGGTTTTTGTGACTGATGGATCCATCATGCATGGTTTACATTCAGAAAAGTTAATGGACACGTTGCTTGCCATTTGCTTTTGCTCCCCATTGATTGATCATGATTCATTTCCACCAATCAACTATAACCTTGCTGGATCTACGGTTGGTTTCTGTAATCTTATAAAAAAGGAGAAAGACCATACAAACCATGTCTGGGTTGCTGATGCTAATGAAAACTCAACctattatttgaaatttgattcCCTACACTGTTCTCACCTCCGAAATGCTGCCAGCTCCGTCACAAGATGGGCTAGCGAATCTAGCTTGATAATGGAGAAACTCAAGGAAAAGCCTCTCAGGGTCAAATGGTTTATAGCTAGTAATGTCACAAATTTATGTTCACCAAATTCATGGATTTTACCAGTTTGTTCTTTGGGACAAGGCCTACTTACTAGCACTTTTATTGGAGAAATAATGGTTGCCATTGTTGTGGCAACTCTTGGATTGGTTCTTTCTGCATTGCTGATTGGTGATTTATGTGGCGAAGAATTATTAACATGGGCATTAGATTCAAGACCAAGTGTGATACTCCCTTCTTCAACAAAAACAGTTAAAGCTATCTCAGAAGTAGAAGTATTTGCACTCATAGATGAAGATCTTAAGTTTGTTGCATCTCAATTTCGAAGATTACATAGTAAACAACTTAGACATAAATTCAGATTTTATTCACACCAATGGAGAACTTGGGCTGCTTGTTTTATTCAAGCTGCATGGAGAAGGCACAAGGAAAGGAAAGAAGCTGCTGAATTAAGGGCTAAGGAGAATCTTATGGCAGCTTCAGAGGCCGAAACAATGTTTTGTTGTTTATAG 4335 0.397 MSTWQLFSDADNNYRWQINSVSDDTSNLITPPTPPTPPIPTPPLPSMYNLLLHASTSHLFQPQEDENAMDDSFGFSNSLFKTGSGRKVTISPNGIVRAKTLLGLGLNDEIVGSDIQTPLNVNKFRGFDDESPHLKVIDSCKKSSCVSFQSPLVSRLRKGCEDKIVQPDSGSSVSGASGAKHAPVKFQTVVGNIQTPQNSKKFNVFDEESQYLQRMDSCKTTSAVPFQSPLVGRLKNDFENKIGQPDNGSGSNIQTPQNVKKFNVFDEESPHLQLMDSCETKSVVSFQSPLVGRLKNGFESKIVQPDSGSVGCAKQVPSKFQTIGNIQTPQNVTKFNAFDEESPHLQLMDSCKTTSVVSFQSPIIGRLKNGFERTSVQPDSGLGGGAKQSPIKFQTAGGRSLSISGDALKRARSLLGDPDLGDFFDGGDSLFSFPDKSETNTITSSVERSESNNTHTTLLHQMTPESNHNHMKKRFTYPLQPSKQMEFSNKLPHEGNGNNLIMKFDDAVNESDCGRKSSNTPGQKPLYNKNDVVNSTMKSSSLNGFSSRMDSRGKALGRALVDISNTITTVDSNNKQPSSGKRRLGLNATVSSFKRPRISHISASGDQGVQKFPNDLSQLSSGASGCKRKVSTRYPFRYPKMHIKEFFVVPPLEQKLHFPNQVIQVTSGNAGKYIFNDGSDDSGMGAEAFAHLLAQHGASLNFASKEWVLNHYKWIVWKLACYERCYPARCAGKFLTVSNVLEELKYRYEREVNHGHRSTIKKILEGDGLPSSMMTLCISSIHSDHVLESGTLIEAQTGNQSTEAVKVELTDGWYSINAILDVPLSKQLAAGRLFVGQKLRIWGAGLCGWNGPVSPLEVSSTVSLFLHMNGTYRAHWADQLGFCKVAGPPLAFKCIKSNGGLVPQTLAGITRIYPILYKERLSSGRSVVISERMEDKMMELHNQRRSAIVDNIVSEYQKERTGSHIYDYGDSEGAKIYKMLETAAEPEFLMADMSPEQLNSFAAYKAKLNATRQLQMESSIEKALKDSGLGNREVTPFMRLRVVGLTYKTRREKPKEGIVTIWNPTQKQRQELVEGEAYAIAGLTPSGSDSDVLHLQTRGSTTKWLPLSSNAKEQFKPFFSSRKSIPLSSLSDIPLSNEFDVVAFVVHVGEVYTSNQQKKQWVFVTDGSIMHGLHSEKLMDTLLAICFCSPLIDHDSFPPINYNLAGSTVGFCNLIKKEKDHTNHVWVADANENSTYYLKFDSLHCSHLRNAASSVTRWASESSLIMEKLKEKPLRVKWFIASNVTNLCSPNSWILPVCSLGQGLLTSTFIGEIMVAIVVATLGLVLSALLIGDLCGEELLTWALDSRPSVILPSSTKTVKAISEVEVFALIDEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKERKEAAELRAKENLMAASEAETMFCCL 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02613 1444 SUPERFAMILY BRCA2 helical domain 593 756 IPR036315 -
Tsu07g02613 1444 MobiDBLite consensus disorder prediction 511 530 - -
Tsu07g02613 1444 Pfam BRCA2 repeat 389 417 IPR002093 -
Tsu07g02613 1444 PANTHER BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2 64 1270 IPR015525 GO:0000724|GO:0006281
Tsu07g02613 1444 ProSiteProfiles IQ motif profile. 1402 1430 IPR000048 GO:0005515
Tsu07g02613 1444 CDD BRCA2DBD_OB1 770 882 IPR015187 GO:0000724
Tsu07g02613 1444 SUPERFAMILY Nucleic acid-binding proteins 757 886 IPR012340 -
Tsu07g02613 1444 SUPERFAMILY BRCA2 tower domain 919 1036 - -
Tsu07g02613 1444 ProSiteProfiles BRCA2 repeat profile. 386 420 IPR002093 -
Tsu07g02613 1444 Pfam BRCA2, oligonucleotide/oligosaccharide-binding, domain 1 758 884 IPR015187 GO:0000724
Tsu07g02613 1444 SUPERFAMILY Nucleic acid-binding proteins 1127 1273 IPR012340 -
Tsu07g02613 1444 Gene3D - 1123 1277 IPR012340 -
Tsu07g02613 1444 Gene3D - 989 1122 IPR012340 -
Tsu07g02613 1444 Gene3D - 888 966 IPR012340 -
Tsu07g02613 1444 SUPERFAMILY Nucleic acid-binding proteins 889 1119 IPR012340 -
Tsu07g02613 1444 Gene3D - 757 885 IPR012340 -
Tsu07g02613 1444 SMART Tower_2 918 959 IPR015205 -
Tsu07g02613 1444 MobiDBLite consensus disorder prediction 513 530 - -
Tsu07g02613 1444 Gene3D Jelly Rolls 1318 1384 IPR014710 -
Tsu07g02613 1444 Pfam BRCA2, helical 640 754 IPR015252 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02613 Tsu-Chr7 30307437 30317346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02613 1332 1439 Ion Channels AT2G28260 79.630 5.41e-49 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02613 K08775 - gmx:100797849 1276.15