Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02610 atGGTGAGTGTATCTGGCTTCGAAGAAGTTGTTGAGCCACCAGCTTTACCTCCATCACCTCCTGATGTGCTTCCTGATATTGAAACAGAGCCAATAGCTCTCCCAACCCATTCTATTATCAGTAGGCCTGGTGTTGGGACCACAGGAAAGCGCATAGCTTTGCTTGTAAACCTCTTCAAAGTTGCTGCTGATGCTACAGATGCAACCTTTTTCCAGTATAGTGTTACTATCACTTCGGAAGATAAAACAGTCGTTGAAAACAAGGGCATCGGGAGAAAACTGATTGATAGGCTTCACCAAACATACTCTTCTGAACTTGGCGGCAAAAGCTTTGTGTATGATGGAGATAGAACTTTGTACACAGTAGGTCCTCTTCCAGATAATAAATTTGAGTTCACAGTCTTACTTGAGGAATCATTTGCCAAACGCAGCGGTACTGAGTGTCCTGATGCTGATGGAAGCCCtcatgaagaaaataaaaggtCAAAACGTTCTTTTCCACCAAAGGCATTCACAGTGGAGATAAGTTTTGCTGCCAAAGTACCCTTGCAATCCATTGCTCTTTCCCTTAAAGGGATTGAGTCATATGCTAATTCTCAGGATGCATTGAGGGTGCTTGATACCATACTGAGGCAGCGAGCAGCTAACAGAGGGTGTCTCTTGGTAAGGcaatcttttttttatgatgactcGAAGAATTTCATTGATGTTGGAGGTGGAGTAACAGGAGTTCGGGGTTTTCATTCCAGTTTTCGTCTTACACAGGGAGGATTGTCTCTTAATTTGGATGTGTCCACAACGATGATCGTAAAACCTGGACCTGTAATCGATTTTCTCCTAACCAATCAGAGTGTGAGGGAACCTCGTTATATTGACTGGACAAAGGCCAAGAGAATGCTTAAAAATTTAAGAGTTCGTGCTACACACCGTAATCAAGAATTCAAAATTTCTGGCTTGAGTGAGAAACCCTGCATTCAACAACTTTTTAGtatgaagatgaaaaatggaGAAGATAGTAATGCGGAGCAGACAGTTGATGTTACTGTATATGAGTATTTTGCTAAACACCGTGGCATTGAGCTGACCTCTTCTGCTTACCTTCCATGTCTCGATGTTGGGAAGCCAAATCGGCCCATCTTTTTACCCCTGGAGCTATGTTCACTTGTTCCCCTCCAGCGGTATACAAAGGCATTATCTCCTGTGCAAAAAGCATCTTTAGTAGAAAAATCACGCCAAAAGCCTCAAGAAAGAATCAAAATTCTGACAAATgctATAGGAAATTCTTgctatgatgatgatgttgttctTGCGGCATGTGGCATTTCTATTGATAAACAATTCACTTCAGTTGAAGGTCGAGTTCTGGAGACACCAAAGTTGAAGGTCGGTAAGAATGAGGACTGTTTACCTAATAATGGAAGGTGGAACTTTAGAAACAAGACACTTCTACAACCATCACAAATTGAATATTGGGCTGTTGTCAACTTTTCTGCTCAATGTGATACTAGTTACATAACAAGGGAGCTGATCAAATGTGGAATGAGCAAGGGAATTAATATTGAACGGCCATATACTTTAATAGAGGAAGAAGTACAAATGAGGAAATATAACCCGGTTGCAAGGGTTGAAAAGATGTTTGACCTGCTGACATCAAAACTTACTAGAGATCCAAAGTTGATTCTTTGTGTCTTGCCAGAGAAGAAAAACTGTGACATCTATgGGCCATGGAAAAGGAAGTGCCTGATTGAAGCTGGGGTTGCCACACAGTGTATTTCCCCTCTCAAGATCACTGATCAGTACCTTACTAACGTACTtcttaaaatcaattctaaGCTTGGAGGAATAAACTCTTTGCTGGCAATTGAGCATTCTGGGCATCTTCCCTTGATTAAAGATACCCCAACGATGATTTTGGGGATGGATGTCTCTCATGGTTCCCCTGGCCGATCAGATATTCCATCAATAGCAGCTGTTGTTGGATCTCGATGTTGGCCTCTAATTTCGAGGTATAGAGCATCTGTGAGATCGCAGTCACCTAAGGTGGAGATGATTGATGCTCTATTCAAGCCTTTGGCTGATGGgaatgatgatggtattatcAGGGAATTGCTTCTAGACTTCTATATTTCAAGTAATAAACGCAGACCAGCTCAAATTATTCTCTTCAGGGATGGAGTTAGTGAATCACAATTTCAACAGGTTTTGAATATAGAGCTTAACCAGATAATAAAGGCCTATAAACTTATTGATGGGGTTGATGTTCCCAAGTTCACTGTTATTGTGGCACAGAAGAATCACCATATAAAGCTGTTTCAAGCTAATGCTCTGGGAAATGTTCCTCCTGGGACAGTTGTCGACACAAAAATTGTGCATCCAAGAAATTATGATTTCTACATGTGTACTCATGCTGGAATGATTGGTACATCTAGGCCTGTACATTATCATGTGCTGCTTGATGAAATTGGATTCTCACCAGATGGCTTGCAAAATTTGATCAATTCCCTGGCTTATGTGAACCAAAGGAGCACTACTGCAACCTCAATTGTGGCACCTATATGCTATGCCCACCATGCTGCAGCTCAAATGGGACAGTTTCTGAATTTGGATGAGTTATCAGAAGCATCTTTGAGTCCTGATTCGGAGGGAAACATCCCCATTCCAGAGCTTCCAAGTTTGCATCCAAATGTCAGGACCTCCATGTTCTTCTGTTGA 2712 0.4015 MVSVSGFEEVVEPPALPPSPPDVLPDIETEPIALPTHSIISRPGVGTTGKRIALLVNLFKVAADATDATFFQYSVTITSEDKTVVENKGIGRKLIDRLHQTYSSELGGKSFVYDGDRTLYTVGPLPDNKFEFTVLLEESFAKRSGTECPDADGSPHEENKRSKRSFPPKAFTVEISFAAKVPLQSIALSLKGIESYANSQDALRVLDTILRQRAANRGCLLVRQSFFYDDSKNFIDVGGGVTGVRGFHSSFRLTQGGLSLNLDVSTTMIVKPGPVIDFLLTNQSVREPRYIDWTKAKRMLKNLRVRATHRNQEFKISGLSEKPCIQQLFSMKMKNGEDSNAEQTVDVTVYEYFAKHRGIELTSSAYLPCLDVGKPNRPIFLPLELCSLVPLQRYTKALSPVQKASLVEKSRQKPQERIKILTNAIGNSCYDDDVVLAACGISIDKQFTSVEGRVLETPKLKVGKNEDCLPNNGRWNFRNKTLLQPSQIEYWAVVNFSAQCDTSYITRELIKCGMSKGINIERPYTLIEEEVQMRKYNPVARVEKMFDLLTSKLTRDPKLILCVLPEKKNCDIYGPWKRKCLIEAGVATQCISPLKITDQYLTNVLLKINSKLGGINSLLAIEHSGHLPLIKDTPTMILGMDVSHGSPGRSDIPSIAAVVGSRCWPLISRYRASVRSQSPKVEMIDALFKPLADGNDDGIIRELLLDFYISSNKRRPAQIILFRDGVSESQFQQVLNIELNQIIKAYKLIDGVDVPKFTVIVAQKNHHIKLFQANALGNVPPGTVVDTKIVHPRNYDFYMCTHAGMIGTSRPVHYHVLLDEIGFSPDGLQNLINSLAYVNQRSTTATSIVAPICYAHHAAAQMGQFLNLDELSEASLSPDSEGNIPIPELPSLHPNVRTSMFFC 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02610 903 Gene3D paz domain 266 394 - -
Tsu07g02610 903 MobiDBLite consensus disorder prediction 144 165 - -
Tsu07g02610 903 CDD Piwi_ago-like 435 861 IPR045246 -
Tsu07g02610 903 CDD PAZ_argonaute_like 272 389 - -
Tsu07g02610 903 Gene3D - 454 620 - -
Tsu07g02610 903 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 32 902 - -
Tsu07g02610 903 Pfam Mid domain of argonaute 470 549 IPR032473 -
Tsu07g02610 903 SUPERFAMILY PAZ domain 267 428 IPR036085 GO:0005515
Tsu07g02610 903 SMART DUF1785_2 220 272 IPR014811 -
Tsu07g02610 903 Gene3D - 626 903 IPR036397 GO:0003676
Tsu07g02610 903 Pfam N-terminal domain of argonaute 50 210 IPR032474 -
Tsu07g02610 903 Pfam Argonaute linker 1 domain 222 270 IPR014811 -
Tsu07g02610 903 ProSiteProfiles Piwi domain profile. 559 867 IPR003165 GO:0003676
Tsu07g02610 903 SUPERFAMILY Ribonuclease H-like 543 865 IPR012337 -
Tsu07g02610 903 SMART PAZ_2_a_3 273 415 IPR003100 GO:0005515
Tsu07g02610 903 MobiDBLite consensus disorder prediction 1 22 - -
Tsu07g02610 903 Pfam Piwi domain 559 866 IPR003165 GO:0003676
Tsu07g02610 903 ProSiteProfiles PAZ domain profile. 297 390 IPR003100 GO:0005515
Tsu07g02610 903 PANTHER PROTEIN ARGONAUTE 6 32 902 - -
Tsu07g02610 903 Pfam PAZ domain 276 405 IPR003100 GO:0005515
Tsu07g02610 903 Pfam Argonaute linker 2 domain 416 461 IPR032472 -
Tsu07g02610 903 SMART Piwi_a_2 559 867 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02610 Tsu-Chr7 30287270 30297669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02610 42 903 Eukaryotic Initiation Factors Gene Family AT1G48410 36.285 7.29e-161 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02610 K11593 - gmx:100778875 1386.7