Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02603 ATGCAAATCTTCGTCAAAACCCTAACGGGTAAGACGATAACCCTCGAGGTTGGATCTTCTGATACCATCGACAACGTCAAGGACAAAATCCAATACAAGGAAGGAATTCCACCGGATCAACAACAACTCATCTTCGCGGGAAAACAGCTTGAAGACGACAGGGCTCTTGCCGACTACAATATCCAGAAGGAATCAACTCTCCACCTTGTTCTCTGTCTCCGTGGTGGTGCTAAGAAGCGTAAGAAGAAGACTTACACTAAGCCAAAGAAGATTAAGCATAAGCATAGGAAAGATTGGACGATCGTTAGGAACAAAAATTGTCACACTTTTCCCCAaattccattttcatcttcttcttcttcttccttctttccATTACGCTCAACAAACAAACCCTTCCAATTTCATGAACTCCACAACGCTTCTTCGTTAATATTCCTTGGAATCAAGGAGTAA 456 0.3925 MQIFVKTLTGKTITLEVGSSDTIDNVKDKIQYKEGIPPDQQQLIFAGKQLEDDRALADYNIQKESTLHLVLCLRGGAKKRKKKTYTKPKKIKHKHRKDWTIVRNKNCHTFPQIPFSSSSSSSFFPLRSTNKPFQFHELHNASSLIFLGIKE 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02603 151 CDD Ubl_ubiquitin 1 76 - -
Tsu07g02603 151 Gene3D - 1 104 - -
Tsu07g02603 151 PRINTS Ubiquitin signature 53 74 IPR019956 -
Tsu07g02603 151 PRINTS Ubiquitin signature 32 52 IPR019956 -
Tsu07g02603 151 PRINTS Ubiquitin signature 11 31 IPR019956 -
Tsu07g02603 151 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Tsu07g02603 151 PANTHER UBIQUITIN 1 97 - -
Tsu07g02603 151 PANTHER - 1 97 - -
Tsu07g02603 151 SMART ubq_7 1 72 IPR000626 GO:0005515
Tsu07g02603 151 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Tsu07g02603 151 Pfam Ubiquitin family 3 71 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02603 Tsu-Chr7 30119199 30120739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02603 1 97 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 90.722 9.40e-44 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02603 K02977 - psom:113276475 147.517