Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu07g02602 | ATGGATGAAACAATGGCGGCAAGATATTGGTGTCATGCTTGTTCTCAAATAGTTTGTCCCATAATGGGAATGGAGATGAAATGCCCAGTTTGTCAAGGTGGATTTGTTGAAGAAATGAGCAGTGCCACCGGTATTAGTGACTTGCAAAATATACCAGAACCTGATTTTGGATCGGATCGTTCTCCCTCCCTTTGGGCACCTATCTTGCTTGGCATGATGGGCAATCCGCGGCTTCGTAGAAGATTGAGACGAATAGAGCTTGAAGAAGACTACGATAGTGGTAATCgtgatgatgataatggtgGTGTAGGACATTATGATCGAGAGCTTGAGTCCATCCTTCGTAGGAGGAGAAGAAGTTCAGCTACCATTCAACAATTGCTCCAAGGCATAAGAGCTGGACTGACATCTGAACCACAAGAGAATACTACTGACAGTGATGACCATGTtagggaaagagaaagagaaagagagcaTGTAATCTTGATTAACCCTTTTAATCAGACTATTATAGTTCAAGGTTCCTATGATTCAAACCGGGATCAAAATGATAATCATAACCCCATTGGGTCTCTAGGTGACTATTTTGTAGGGCCTGGTTTGGATCTATTGTTGCAACATTTGTCTGAGAATGACCCTAATAGATATGGAACTCCACCTGCACCGAAGGAAGCCGTTGAAGCTCTACCTACTGTGAAGATCAATGAGAATTTGCAATGTTCTGTCTGTTTGGATGATTTTGAAGTTGGTTCTGAAGCTAAAGAGATGCCATGTAAACATAGGTTTCATAGTGCTTGTATCCTACCCTGGCTGGAGCTTCATAGTTCTTGTCCAGTTTGCAGGTCTCAATTGCGAGTGGATGAACCTAAGCAAGACTCTGATGTGTCAAGAAATCGCAGAAATCAAAGGGAGGATGCAAATATCGGACATGCCAATGCCGATGCTGAAGGAGATAGTGAAGGGAGAAGTCCAGGTGGGGGTAGAAGATTCTCATTTCCGTGGCCTTTCAATGGAttattttcttcatcatcttctagTTCCAGTTCAAATGGAAATGGTACTCCATCAGAAAGAAACTGA | 1080 | 0.4037 | MDETMAARYWCHACSQIVCPIMGMEMKCPVCQGGFVEEMSSATGISDLQNIPEPDFGSDRSPSLWAPILLGMMGNPRLRRRLRRIELEEDYDSGNRDDDNGGVGHYDRELESILRRRRRSSATIQQLLQGIRAGLTSEPQENTTDSDDHVREREREREHVILINPFNQTIIVQGSYDSNRDQNDNHNPIGSLGDYFVGPGLDLLLQHLSENDPNRYGTPPAPKEAVEALPTVKINENLQCSVCLDDFEVGSEAKEMPCKHRFHSACILPWLELHSSCPVCRSQLRVDEPKQDSDVSRNRRNQREDANIGHANADAEGDSEGRSPGGGRRFSFPWPFNGLFSSSSSSSSSNGNGTPSERN | 359 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu07g02602 | 359 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 2 | 341 | - | - | |
Tsu07g02602 | 359 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 2 | 341 | - | - | |
Tsu07g02602 | 359 | SMART | ring_2 | 240 | 280 | IPR001841 | - | |
Tsu07g02602 | 359 | Pfam | zinc-ribbon | 8 | 39 | IPR039525 | GO:0061630 | |
Tsu07g02602 | 359 | SUPERFAMILY | RING/U-box | 229 | 290 | - | - | |
Tsu07g02602 | 359 | MobiDBLite | consensus disorder prediction | 286 | 334 | - | - | |
Tsu07g02602 | 359 | MobiDBLite | consensus disorder prediction | 340 | 359 | - | - | |
Tsu07g02602 | 359 | CDD | RING-H2_RNF126_like | 239 | 281 | - | - | |
Tsu07g02602 | 359 | MobiDBLite | consensus disorder prediction | 131 | 153 | - | - | |
Tsu07g02602 | 359 | Pfam | Ring finger domain | 239 | 281 | IPR001841 | - | |
Tsu07g02602 | 359 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 207 | 286 | IPR013083 | - | |
Tsu07g02602 | 359 | ProSiteProfiles | Zinc finger RING-type profile. | 240 | 281 | IPR001841 | - | |
Tsu07g02602 | 359 | MobiDBLite | consensus disorder prediction | 286 | 323 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu07g02602 | Tsu-Chr7 | 30118073 | 30119152 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu07g02602 | 140 | 287 | C3H Transcription Factor Family | AT1G26800 | 38.000 | 1.68e-24 | 97.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu07g02602 | K11982 | - | gmx:100784876 | 457.218 |