Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02602 ATGGATGAAACAATGGCGGCAAGATATTGGTGTCATGCTTGTTCTCAAATAGTTTGTCCCATAATGGGAATGGAGATGAAATGCCCAGTTTGTCAAGGTGGATTTGTTGAAGAAATGAGCAGTGCCACCGGTATTAGTGACTTGCAAAATATACCAGAACCTGATTTTGGATCGGATCGTTCTCCCTCCCTTTGGGCACCTATCTTGCTTGGCATGATGGGCAATCCGCGGCTTCGTAGAAGATTGAGACGAATAGAGCTTGAAGAAGACTACGATAGTGGTAATCgtgatgatgataatggtgGTGTAGGACATTATGATCGAGAGCTTGAGTCCATCCTTCGTAGGAGGAGAAGAAGTTCAGCTACCATTCAACAATTGCTCCAAGGCATAAGAGCTGGACTGACATCTGAACCACAAGAGAATACTACTGACAGTGATGACCATGTtagggaaagagaaagagaaagagagcaTGTAATCTTGATTAACCCTTTTAATCAGACTATTATAGTTCAAGGTTCCTATGATTCAAACCGGGATCAAAATGATAATCATAACCCCATTGGGTCTCTAGGTGACTATTTTGTAGGGCCTGGTTTGGATCTATTGTTGCAACATTTGTCTGAGAATGACCCTAATAGATATGGAACTCCACCTGCACCGAAGGAAGCCGTTGAAGCTCTACCTACTGTGAAGATCAATGAGAATTTGCAATGTTCTGTCTGTTTGGATGATTTTGAAGTTGGTTCTGAAGCTAAAGAGATGCCATGTAAACATAGGTTTCATAGTGCTTGTATCCTACCCTGGCTGGAGCTTCATAGTTCTTGTCCAGTTTGCAGGTCTCAATTGCGAGTGGATGAACCTAAGCAAGACTCTGATGTGTCAAGAAATCGCAGAAATCAAAGGGAGGATGCAAATATCGGACATGCCAATGCCGATGCTGAAGGAGATAGTGAAGGGAGAAGTCCAGGTGGGGGTAGAAGATTCTCATTTCCGTGGCCTTTCAATGGAttattttcttcatcatcttctagTTCCAGTTCAAATGGAAATGGTACTCCATCAGAAAGAAACTGA 1080 0.4037 MDETMAARYWCHACSQIVCPIMGMEMKCPVCQGGFVEEMSSATGISDLQNIPEPDFGSDRSPSLWAPILLGMMGNPRLRRRLRRIELEEDYDSGNRDDDNGGVGHYDRELESILRRRRRSSATIQQLLQGIRAGLTSEPQENTTDSDDHVREREREREHVILINPFNQTIIVQGSYDSNRDQNDNHNPIGSLGDYFVGPGLDLLLQHLSENDPNRYGTPPAPKEAVEALPTVKINENLQCSVCLDDFEVGSEAKEMPCKHRFHSACILPWLELHSSCPVCRSQLRVDEPKQDSDVSRNRRNQREDANIGHANADAEGDSEGRSPGGGRRFSFPWPFNGLFSSSSSSSSSNGNGTPSERN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02602 359 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 341 - -
Tsu07g02602 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 341 - -
Tsu07g02602 359 SMART ring_2 240 280 IPR001841 -
Tsu07g02602 359 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Tsu07g02602 359 SUPERFAMILY RING/U-box 229 290 - -
Tsu07g02602 359 MobiDBLite consensus disorder prediction 286 334 - -
Tsu07g02602 359 MobiDBLite consensus disorder prediction 340 359 - -
Tsu07g02602 359 CDD RING-H2_RNF126_like 239 281 - -
Tsu07g02602 359 MobiDBLite consensus disorder prediction 131 153 - -
Tsu07g02602 359 Pfam Ring finger domain 239 281 IPR001841 -
Tsu07g02602 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 286 IPR013083 -
Tsu07g02602 359 ProSiteProfiles Zinc finger RING-type profile. 240 281 IPR001841 -
Tsu07g02602 359 MobiDBLite consensus disorder prediction 286 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02602 Tsu-Chr7 30118073 30119152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02602 140 287 C3H Transcription Factor Family AT1G26800 38.000 1.68e-24 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02602 K11982 - gmx:100784876 457.218