Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02590 ATGAGGAGTCCTAATCCTTCATCACCAACAAATTCAAATAAGAAGAAGCAGAAAATGAACAACAGTAGTAACAATGGAAGCAGTAGCAACAGTACAACAACAACTACACCTTGTTGCAGCAAGATAGGATTAAAGAGAGGACCATGGACatctgaagaagatgaagtattATCAGAATACATTAAGAAAGAAGGTGAAGGTCGTTGGAGAACTTTACCCAAACGTGCTGGTCTTCTTCGTTGTGGTAAAAGTTGTCGTCTCCGTTGGATGAATTATCTTCGTCCTTCTGTCAAACGTGGTCAGATCGCTCCTGATGAAGAAGATCTCATTCTCCGTCTTCACCGTCTTCTCGGCAACAGGTGGTCATTGATAGCTGGGAGAATTCCAGGAAGAACTGATAATGAGATAAAGAATTATTGGAACACACATCTTAGTAAGAAACTCATTAATCAAGGGATTGATCCAAGAACTCACAAGCCTCTTAACAATATTAATCCATCTACTTCTTCAATAATCCCAAATATTAATCACCAAATCAATACTCCTTTCACATCTTCACCTACTCCACCTATGATTTACGATGAAtctgatcatcatcatcatttagCTCAATATCATAATCATTATTATCCACAACAACAAGAAGAAGCTAAGGAGGTTAATGATGATGCTAATTgtgataatttaattaatgatgttTCTGTAATGGATAAAGGTGACAACAATAACAAAGGGGATTGCGATAAAAGTAGTACCGATTATTGTTGCGATGATGTGTTTACTTCATTCTTGGATTCATTGATCAATGACGATGCTTTTGCTGCACATCGATCCGAGAATGATCCAGCTGATCCTTTGATTTCATCTGCTGTACCATCAGTATTGTGGGAATCACCACTTATGTCTACTAATTTCACCCGAAAGGAAGATTCAACCAAGACTGGCAAGCTTCATGATGCATAG 963 0.3603 MRSPNPSSPTNSNKKKQKMNNSSNNGSSSNSTTTTTPCCSKIGLKRGPWTSEEDEVLSEYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLINQGIDPRTHKPLNNINPSTSSIIPNINHQINTPFTSSPTPPMIYDESDHHHHLAQYHNHYYPQQQEEAKEVNDDANCDNLINDVSVMDKGDNNNKGDCDKSSTDYCCDDVFTSFLDSLINDDAFAAHRSENDPADPLISSAVPSVLWESPLMSTNFTRKEDSTKTGKLHDA 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02590 320 CDD SANT 104 144 IPR001005 -
Tsu07g02590 320 CDD SANT 48 93 IPR001005 -
Tsu07g02590 320 Gene3D - 46 98 - -
Tsu07g02590 320 ProSiteProfiles Myb-like domain profile. 94 144 IPR001005 -
Tsu07g02590 320 ProSiteProfiles Myb-like domain profile. 41 93 IPR001005 -
Tsu07g02590 320 Gene3D - 103 168 - -
Tsu07g02590 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 148 IPR017930 -
Tsu07g02590 320 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 27 281 - -
Tsu07g02590 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 93 IPR017930 -
Tsu07g02590 320 Pfam Myb-like DNA-binding domain 103 144 IPR001005 -
Tsu07g02590 320 Pfam Myb-like DNA-binding domain 46 93 IPR001005 -
Tsu07g02590 320 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 27 281 - -
Tsu07g02590 320 SMART sant 98 146 IPR001005 -
Tsu07g02590 320 SMART sant 45 95 IPR001005 -
Tsu07g02590 320 SUPERFAMILY Homeodomain-like 43 140 IPR009057 -
Tsu07g02590 320 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02590 Tsu-Chr7 29955944 29957307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02590 26 270 MYB Transcription Factor Family AT3G13540 55.061 3.96e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu07g02590 Myb_DNA-binding 4.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02590 K09422 - gmx:100797847 310.457