Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02580 ATGCGATCTTCATGGGCTGATTTGGCTGCAAATTCTGCGGCTGAAAATGCACCACCAACTTCTGCTGCTAACAATgctaacaacaacaacactcaACCTCCTTCTCGACCTGTTTATGTTCCTCCTCATTTGAGGAACCGTGGACCTACAGCACCAGCACCAGCTTCGTCGGAGAGATTTTCTGCTCCGACTGCTTTTGATAATTCCGGATCGCGGTGGGCGCCACCTCCGAGAAACGATTACCGTGGtcgtggtggtggtggtggttttgGGAATAGgactggtggtggtggtggttgggATCGGCGTGAAGCGAATCCGTTTGCGGATCAGGATGATTCTGAAGAGCCTGTTACTCAAGAGGAGCAGGAGAATACAGGGATTAACTTTGATGCTTATGAGGATATTCCGGTGGAGACTAGCGGTGGGAATGTTCCTCCTCCGGTGAATACTTTTGCTGAGATTGACTTGGGTGAAGCACTTAATCAGAATATTAGGAGATGCAAATATGTGAAGCCAACACCTGTTCAGCGGCATGCAATACCGATATCTCTTGCTGGAAGGGATTTGATGGCTTGTGCGCAGACAGGTTCTGGAAAGACTGCTGCATTTTGTTTTCCGATTATCAGTGGAATTATGACTGGACAGCCTGCTCAGAGGCCGCCTCGTGGGGTGCGTACGGTGTGTCCACTTGCGCTCGTTCTCTCGCCAACCAGGGAGCTATCGATGCAGATACATGAAGAGGCTAGGAAGTTTTCATATCAAACAGGGGTTAGGGTGGTTGTTGCTTATGGTGGAGCTCCAATAAACCAGCAGCTACGAGAGCTTGAGAGAGGGGTAGACATTCTTGTCGCAACTCCAGGAAGACTGGTAGATTTGTTGGAAAGGGCTAGGGTTTCACTTTCACTGATTAGGTATCTGGCCTTAGACGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCACAGATAAGGAAGATAGTAGAACAAATGGACATGCCTCCGGCAGGTGTCAGACAGACTATGCTGTTCAGTGCCACTTTTCCAAAAGAGATAcagAGACTAGCCTCTGATTTCctttcaaattatatttttctggCTGTTGGAAGAGTGGGATCAAGTACCGATTTGATTGACCAAAGAGTTGAGTACGTTCAAGAGTCTGACAAGAGAAGCCATCTGATGGACCTTCTTCATGCACAGAGAGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTGGAACACTGGTTGTGTCTTAATAATTTCCCAGCAACTACTATTCACGGTGACAGGACACAACAGGAAAGAGAAGCAGCATTGAGATCATTTAAAAGTGGCAACACCCCCATATTGGTTGCCACGGATGTGGCTGCACGTGGTCTTGACATTCCTCATGTTGCACATGTAGTTAACTTTGACCTTCCCAATGATATTGATGATTATGTACACCGTATTGGAAGGACGGGGAGAGCAGGAAAGAAAGGTCTTGCAACTGCATTCTTTAATGAAAACAATGCATCCCTAGCAAGGTCTCTACAAGATTTGATGCAAGAAGCGAATCAAGAAGTACCTGCTTGGCTCTCGCGGTTCGCTGCACGATCATCCTTCGGTGGAGGAAAGAACCGTCGATCAGGAGGCCGATTTGGTGGCCGTGACTTTCGAAGAGATGGTTCTTTTAATAGGGGTGGTCCTGATTACCAGGGTGCAGGAAATAGCAGTGGTGGATATGGGGCTTCTGGTGGGTATGGTGGAGGATACGGTGGGTATGCAGGAAATAGCGCTGGTCCTGGGGTGACCAGTGCATGGGACTGA 1851 0.4571 MRSSWADLAANSAAENAPPTSAANNANNNNTQPPSRPVYVPPHLRNRGPTAPAPASSERFSAPTAFDNSGSRWAPPPRNDYRGRGGGGGFGNRTGGGGGWDRREANPFADQDDSEEPVTQEEQENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLSLIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRTQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNASLARSLQDLMQEANQEVPAWLSRFAARSSFGGGKNRRSGGRFGGRDFRRDGSFNRGGPDYQGAGNSSGGYGASGGYGGGYGGYAGNSAGPGVTSAWD 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02580 616 CDD DEADc_DDX3_DDX4 151 372 IPR044763 GO:0003724|GO:0005524
Tsu07g02580 616 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 53 580 - -
Tsu07g02580 616 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 53 580 - -
Tsu07g02580 616 CDD SF2_C_DEAD 378 514 - -
Tsu07g02580 616 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 150 178 IPR014014 GO:0003724
Tsu07g02580 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 522 IPR027417 -
Tsu07g02580 616 Gene3D - 105 368 IPR027417 -
Tsu07g02580 616 Gene3D - 369 548 IPR027417 -
Tsu07g02580 616 SMART helicmild6 424 505 IPR001650 -
Tsu07g02580 616 MobiDBLite consensus disorder prediction 558 572 - -
Tsu07g02580 616 MobiDBLite consensus disorder prediction 549 587 - -
Tsu07g02580 616 MobiDBLite consensus disorder prediction 1 127 - -
Tsu07g02580 616 Pfam DEAD/DEAH box helicase 174 355 IPR011545 GO:0003676|GO:0005524
Tsu07g02580 616 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 377 544 IPR001650 -
Tsu07g02580 616 MobiDBLite consensus disorder prediction 1 34 - -
Tsu07g02580 616 Pfam Helicase conserved C-terminal domain 390 505 IPR001650 -
Tsu07g02580 616 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 366 IPR014001 -
Tsu07g02580 616 SMART ultradead3 169 381 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02580 Tsu-Chr7 29818482 29825952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02580 139 537 Eukaryotic Initiation Factors Gene Family AT3G19760 32.500 1.69e-64 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02580 K11594 - gmx:100795756 909.442