Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02505 ATGGTTTCAATTTCAATCCTCAAATTTCGTACAATATTCTACACAATAGAAGCTACAGTTTGCAAAACACATGGTGCCTTCAGACACTGTCATTCTGGTTCTAGGGGCAGTAGGCAGAATTTCGATAATAACCCGAACTTGTCACCAAATGAGAAGCTATGTAGAGTGGGGATTTTCTGGGATTTGGATAACAAGCCACCCAATTCAATTCCACCTTATGAAGTTGCTAACAAGCTGAGAATAGTTGCAGCTTCATTCGGTGTTGTTCGGTATATGGTGGCTTATGCGAATAGCCACACGTTTAGCTATGTTCCTCATGTTGTTCGAGAGATGAGGAAAGAGCGACAGTTGTTATTTCGTTTGGAGGATAAGGGTGTGATCAAGCGTAATGAGCCTCATATTTGTTGTGTTTGTGGGAGAAAATTTTATACTAATGAAAAGCTTGTTAATCATTTCAAGCAACTGCATCAGCGGGAGCACGCGAAAAGGGTGAATCAGATAGAGTCGGCTAGAGGGAGTAGGAAGGTGAAATTGGTGGGTAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCCGCAAGTGCTGTTCTGACTCCCAAAGTTGGGTATGGTTTGGCGGAGGAGCTGAAACGGGCAGGGTTTTGGGTTCAAACTGTGTTGGATAGGCCGCAAGCTGCGGATATTGCGTTGAAAAAGCATATGGTGGATATGATGGATCATAGGAGGGTTGAGTGTGTGGTTCTTGTATCCGATGATTCTGATTTTGTTGATGTCATAAATGAGGCAAAACTACGGTGTCTCAAAACTGTTGTTATTGGGGATATTAGTAGTGACGGTGTCTTGAAAAGGACTGCTGATACTGCCTTTTCTTGGGAGGAAATTTTGACGGGGAAGGCTACGAAGGAGGCTGTATCGGTTGTGGAAAATTGGAAAGATCGTGATATATTAAAAAGGTTGGAGTGGACATACATTCCTGACGTGGATAAAAAGAAACTCAACCTGGATGATGCAGTTGCTGAAACATCTGGAGATGATGATATTGAAGATATCTTCAATGGTGTTGATGATGACTACAAGGATGACAGAGGTGCTTGGTGGGAATTAGACCTCGATGATAATGATGTTAGAAATGGATAA 1137 0.4186 MVSISILKFRTIFYTIEATVCKTHGAFRHCHSGSRGSRQNFDNNPNLSPNEKLCRVGIFWDLDNKPPNSIPPYEVANKLRIVAASFGVVRYMVAYANSHTFSYVPHVVREMRKERQLLFRLEDKGVIKRNEPHICCVCGRKFYTNEKLVNHFKQLHQREHAKRVNQIESARGSRKVKLVGKYSMKMEKYKKAASAVLTPKVGYGLAEELKRAGFWVQTVLDRPQAADIALKKHMVDMMDHRRVECVVLVSDDSDFVDVINEAKLRCLKTVVIGDISSDGVLKRTADTAFSWEEILTGKATKEAVSVVENWKDRDILKRLEWTYIPDVDKKKLNLDDAVAETSGDDDIEDIFNGVDDDYKDDRGAWWELDLDDNDVRNG 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02505 378 Pfam NYN domain 205 288 IPR021139 GO:0004540
Tsu07g02505 378 ProSitePatterns Zinc finger C2H2 type domain signature. 135 156 IPR013087 -
Tsu07g02505 378 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 27 375 - -
Tsu07g02505 378 CDD PIN_LabA-like 143 274 - -
Tsu07g02505 378 Gene3D - 50 295 - -
Tsu07g02505 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 161 IPR013087 -
Tsu07g02505 378 PANTHER - 27 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02505 Tsu-Chr7 28752442 28755301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02505 43 373 C2H2 Transcription Factor Family AT4G12240 56.598 2.81e-135 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu07g02505 NYN 9.6e-08 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02505 - - lja:Lj3g3v3326020.1 571.622