Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02502 ATGAGAATAAAAAGCGTCGTCACCGGTGGCCGCCGCCGTAGTATTACACCTCGTCCCACTCCTTCCATCTCTCCTATTCCTGATCTCTCCACCGCCCAGGACAACCACAATGCAACCGTCTATGACAGCGATACCAGCAAAGACAACCACACACACGCTCCAATTCCCGATTTCGTTCCGGATACCGACACCGACGATTCGTTAGACGATAACAGTTGCGTTACCTGCAACAAAGCCGGAGGAGTGTTGCTGGATCTTGTAAACCGGGATCTACATGAACAGGAAGTTTATGAGAAAGGAAAAGAACACAATGATAATGATAAAGATAAACATAAAGGAGAGGTTTCTGTATCGGGGAGTTCGGTTGCGGCTGTGAAAAAATCTTTGTTACCGGAACGGAAAGCTGCTGCTCGTGGTGATGACGGAGAGCAGGAGGAAGTTACCAGTTCTAGAAGAACTATAAGTCGACGAAAGCAAGTCAAGAAGCAGAAGTTGTTTACTGTAAAGCGTAGGAAATTGTTTTGGACAGCCGAAGAAGAAAAAGCTCTCGAGGAAGGAGTGGCGAAGTTCTCAACAGAAAATCAGGATATCCCTTGGAggaaaattttagaatttggtTGTCGTGTGTTCGATAGCACTCGTACTCCTGTTGATCTCAAGGATAAATGGAGGAACATGAAGAAGGAAGGATGCAAGTAG 699 0.4521 MRIKSVVTGGRRRSITPRPTPSISPIPDLSTAQDNHNATVYDSDTSKDNHTHAPIPDFVPDTDTDDSLDDNSCVTCNKAGGVLLDLVNRDLHEQEVYEKGKEHNDNDKDKHKGEVSVSGSSVAAVKKSLLPERKAAARGDDGEQEEVTSSRRTISRRKQVKKQKLFTVKRRKLFWTAEEEKALEEGVAKFSTENQDIPWRKILEFGCRVFDSTRTPVDLKDKWRNMKKEGCK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02502 232 CDD SANT_TRF 175 228 - -
Tsu07g02502 232 MobiDBLite consensus disorder prediction 98 115 - -
Tsu07g02502 232 SMART sant 171 229 IPR001005 -
Tsu07g02502 232 MobiDBLite consensus disorder prediction 15 40 - -
Tsu07g02502 232 SUPERFAMILY Homeodomain-like 170 227 IPR009057 -
Tsu07g02502 232 Pfam Myb-like DNA-binding domain 175 227 IPR001005 -
Tsu07g02502 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 167 231 IPR017930 -
Tsu07g02502 232 MobiDBLite consensus disorder prediction 1 68 - -
Tsu07g02502 232 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 96 229 - -
Tsu07g02502 232 MobiDBLite consensus disorder prediction 131 153 - -
Tsu07g02502 232 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 96 229 - -
Tsu07g02502 232 Gene3D - 165 230 - -
Tsu07g02502 232 ProSiteProfiles Myb-like domain profile. 167 227 IPR001005 -
Tsu07g02502 232 MobiDBLite consensus disorder prediction 98 154 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02502 175 226 Single Myb Histone (SMH) Gene Family AT1G49950 49.091 4.67e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu07g02502 Myb_DNA-binding 2.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02502 - - mtr:MTR_3g082160 144.436