Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02493 ATGGGAAGAGGAAGAGTGGAATTGAAGAGAATTGAGAACAAAATCAACAGACAAGTTACCTTTGCAAAACGAAGGAATGGTCTTTTGAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCAGAAGTTGCTCTAATCGTCTTCTCTAATCGAGGAAAACTCTACGAGTTTTGCAGCACTTCTAGCATGCTCAAAACTCTTGAGAGGTATCAGAAATGCAACTACGGAGCACCTGAAGCTAATGTGTCATCAAAGGAAGCTTTGGTATTGgaattaagcAGTCAACAGGAATACTTGAAGCTTAAGGCACGTTATGAATCTCTACAACGCTCTCAAAGGAACCTTATGGGAGAGGATCTTGGCCCTCTAAGCAGCAAAGATCTTGAAACACTTGAAAGACAGCTAGATTCATCCTTGAAACAAATCAGATCCACAAGGacCCAATTCATGCTGGATcagctgggtgatcttcagcgTAAGGAACACTTGCTATGTGAAGCAAACAGAGCTCTCAGACAAAGGATGGAAGGGTATGAAATAAATTCTCTGCAACTGAATTTGAGTGCTGAAGATATGGGATATGgacgtcatcatcatcatcatcatcaagttCACAACCAGGGTGATGATCTATTTCAACCAATTGATCAGTGTCAACCAACCTTACAAATTGGATATCAGGCTGATCCAGCAGGATCAGTGGTCACAGCAGGCCCAAGCATGAATAATTTCATGGCTGGATGGTTACCATGA 753 0.3798 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEANVSSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRMEGYEINSLQLNLSAEDMGYGRHHHHHHQVHNQGDDLFQPIDQCQPTLQIGYQADPAGSVVTAGPSMNNFMAGWLP 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02493 250 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu07g02493 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu07g02493 250 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Tsu07g02493 250 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Tsu07g02493 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 232 - -
Tsu07g02493 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu07g02493 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu07g02493 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu07g02493 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu07g02493 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu07g02493 250 Coils Coil 128 148 - -
Tsu07g02493 250 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 232 - -
Tsu07g02493 250 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Tsu07g02493 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tsu07g02493 250 Pfam K-box region 94 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02493 Tsu-Chr7 28591162 28594969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02493 1 250 MADS-box Gene Family AT1G24260 70.518 6.86e-116 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu07g02493 K-box 2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02493 - - gmx:100778931 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g02493 07 28591162 28594969 Tsu07g02493 07 28591162 28594969 ECH
Tsu07g02493 07 28591162 28594969 Tsu02g01190 02 9960331 9965923 PCT