Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02484 ATGTCTAATCCGAACCCAGATTCACATCACCCGACCCGGATACTTCACCCGCACCAAGATCCAAATACCAACACCGCTGACCCTCACGTTCCGCTTCGGAACCTATCCTTAGTTCGGACGAGAATCGATTCTCTACGAACCTTCCTATCTCAATCAATCAACACCAACGCTCCTATCACCAACGATCAATCAACCGTCATCTCCAACCAGATCGTCTCCGCCATCCACCACACAATAGTCAACGCCGCCGCCCTCGTTTCCTATTCTCAAAATCTCACCGTTCCCAGAGCCTCCATCTTCCCACCGAAGAATCTCATACCAGAACCCTCCACCGTAGACAACTCCAAGCAACAAAAGCTCGATTCAAAAATCGAAAACGACGGCGACGATGGTGACATCGGCGATGACTTCCTCATCGACGACGATTGCGAAATCGTGGAACTCGATGCCGTCGAATTACTAGCTGAACATCTTCATTTCTGCGAGATTTGCGGAAAAGGATTTAAACGTGATGCGAATCTCCGGATGCATATGAGAGCACACGGTAACAAATTCAAGACACTGGAAGCATTAGCGAAGCCTTTAAACTACGAAACACGACGTCGTTCAACGAAATTCTCTTGTCCATTTGAAGGATGTAACAGAAACAAGAAGCATAAGAAATTCAAGGCTTTAAAATCAGTTATTTGTGTTAAGAATCATTTCAAGAGAAGTCATTGTCCGAAAATGTATTCGTGTAACCGTTGTAATAAGAAGAAATATTCAGTTGTTTCGGATTTGAAGAGTCATATGAAACAGTGTGGTGATGAATGTAAGTGGAAATGTTGTTGTGGGACAACGTTTTCTAGGAAAGATAAGTTGTTTGGACATGTTGCTTTGTTTGAAGGTCATATGCCTGCTGTTTTATTGGAAGAATGTGAGGAGAAAGGGAAACAAGTTGTGGTTGATGAGATTGAAGATTCtattatggagaaagaaaaagatgatttggGTATGGATGAAGATTTTTATGATGATTTTGGGTTTATTGATAACTATTGTTTGGAGGAAGTTTTGGGATTTCGTGGTAGTTAG 1074 0.4162 MSNPNPDSHHPTRILHPHQDPNTNTADPHVPLRNLSLVRTRIDSLRTFLSQSINTNAPITNDQSTVISNQIVSAIHHTIVNAAALVSYSQNLTVPRASIFPPKNLIPEPSTVDNSKQQKLDSKIENDGDDGDIGDDFLIDDDCEIVELDAVELLAEHLHFCEICGKGFKRDANLRMHMRAHGNKFKTLEALAKPLNYETRRRSTKFSCPFEGCNRNKKHKKFKALKSVICVKNHFKRSHCPKMYSCNRCNKKKYSVVSDLKSHMKQCGDECKWKCCCGTTFSRKDKLFGHVALFEGHMPAVLLEECEEKGKQVVVDEIEDSIMEKEKDDLGMDEDFYDDFGFIDNYCLEEVLGFRGS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02484 357 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 2 353 - -
Tsu07g02484 357 MobiDBLite consensus disorder prediction 1 30 - -
Tsu07g02484 357 MobiDBLite consensus disorder prediction 103 126 - -
Tsu07g02484 357 ProSitePatterns Zinc finger C2H2 type domain signature. 161 181 IPR013087 -
Tsu07g02484 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 186 IPR013087 -
Tsu07g02484 357 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 2 353 IPR044300 GO:0010044|GO:0010447
Tsu07g02484 357 SUPERFAMILY beta-beta-alpha zinc fingers 155 182 IPR036236 -
Tsu07g02484 357 Gene3D Classic Zinc Finger 159 182 - -
Tsu07g02484 357 SMART c2h2final6 244 265 IPR013087 -
Tsu07g02484 357 SMART c2h2final6 159 181 IPR013087 -
Tsu07g02484 357 SMART c2h2final6 206 239 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02484 Tsu-Chr7 28418445 28419927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02484 127 305 C2H2 Transcription Factor Family AT1G34370 59.783 8.61e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu07g02484 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02484 - - cam:101491258 499.59