Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02456 ATGAAGAGACTTCCTACCTCAGATTCTTCAAATCCTCTCATCACTATCTCTCCATCAACAGAGGAACAAAGTCCAAGGAACAAACACGTGTATGGTATGGAGTTTCAATCAATGATGTTGGATGGATTTGAAGACGAAGGGTGTTGTGAAGAAACCGGCCATCACTCGGAGAAGAAACGACGATTAAGAGTGGATCAAGTTAAGGCTTTAGAGAAAAATTTCGAGGTAGAAAACAAGCTTGAGCCTGAAAGAAAAGAGAAGCTTGCTATAGAACTTGGGTTGCAGCCTAGACAAGTTGCTGTTTGGTTCCAAAACCGTCGTGCTAGATGGAAGACAAAACAGTTGGAAAGAGATTATGGTGTTCTTAAAGCTAATTATGATGCTCTTAAGCTCAAATATGATGCAATTGCTCAAGATAACAAAGCTCTTAACAAGGAGATTAAGGAATTGAAATCAAAGCTGGAAGAAGGAGAAAAAAGCGCAAGCAGTGTTTTGGTGAAGGAGGAGATAACGATGCTTGAACCCGAAGACAAGCATAACCCATCTTCGGAAACATCAATTCCTAGTTCAGAATCCAAGGATCACTTGAATTATGACTGcataatcaacaacaatgatATTGGTATTGGAGAAGCTTCTTCACTCTTTCCTGTAGACTTGAGAGACGGTTCTTCCGACAGCGACTCTAGCGCAATTTCTTCATCCGGGGTTCTTCAAAGTCACCTTTTATTGTCTCCTGACTCTTCCTCCATGAGTTGCTTCCAATACCAAAAATCCTATCAAGTGAAGATGGAGGAGCAGAACTTCTTAAGTGCAGATGAGGCATGCAATTTTTTCTCGGATGATCAAGCGCCGACGCTACAATGGTACTGTCCTGAACAATGGAGTTaa 891 0.4063 MKRLPTSDSSNPLITISPSTEEQSPRNKHVYGMEFQSMMLDGFEDEGCCEETGHHSEKKRRLRVDQVKALEKNFEVENKLEPERKEKLAIELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLKYDAIAQDNKALNKEIKELKSKLEEGEKSASSVLVKEEITMLEPEDKHNPSSETSIPSSESKDHLNYDCIINNNDIGIGEASSLFPVDLRDGSSDSDSSAISSSGVLQSHLLLSPDSSSMSCFQYQKSYQVKMEEQNFLSADEACNFFSDDQAPTLQWYCPEQWS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02456 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 244 287 IPR045224 GO:0003700
Tsu07g02456 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 233 IPR045224 GO:0003700
Tsu07g02456 296 Gene3D - 52 120 - -
Tsu07g02456 296 Coils Coil 112 160 - -
Tsu07g02456 296 SMART HOX_1 56 117 IPR001356 GO:0003677
Tsu07g02456 296 MobiDBLite consensus disorder prediction 171 192 - -
Tsu07g02456 296 SUPERFAMILY Homeodomain-like 46 115 IPR009057 -
Tsu07g02456 296 MobiDBLite consensus disorder prediction 1 26 - -
Tsu07g02456 296 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Tsu07g02456 296 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Tsu07g02456 296 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Tsu07g02456 296 MobiDBLite consensus disorder prediction 1 27 - -
Tsu07g02456 296 Pfam Homeobox associated leucine zipper 113 154 IPR003106 GO:0006355|GO:0043565
Tsu07g02456 296 CDD homeodomain 58 114 IPR001356 GO:0003677
Tsu07g02456 296 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Tsu07g02456 296 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Tsu07g02456 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 233 - -
Tsu07g02456 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 244 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02456 Tsu-Chr7 28102735 28105381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02456 1 296 Homeobox Transcription Factor Family AT4G40060 45.963 2.34e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu07g02456 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02456 K09338 - gmx:100796213 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g02456 07 28102735 28105381 Tsu07g02456 07 28102735 28105381 ECH