Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02453 ATGTCGAGCGGAAAGAAAACTCAAGGTCGCCAAAAGGttgaaataaaaagaatgaccaACAAGAGAGACATGCAAGTGACATTCACGAAGCGTCGTAGCGGGCTTTTCAAGAAAGCTAGTGAGCTTTGCACTCTTTGTGATGCTGATGTTGCTCTCGTTGTGTTTTCACCTAGTGAAAAGGTATATTCCTTTGGTTACCCTAATGTTGATACAGTCATAGATCGGTATCTCTCGCGGGTTCCACATCAAAACAATGGAACCATAGGATTCGTTGAGGCTCAGCGCAGTGCCAACATTCATGAGCTCAATTCTCAGTTAACACGGATCAACAACATATTAGACATCGAGAAGAGGCGTATGGATGAGCTGAgtcaaattcaaaatatgaCTGAGGCTCAGTATTGGTGGGCTCGTCCCTTTGATGGGATGAATAGGGATCAACTTgagtttttgatgaaaaattatGAGAATATGAAGAATCTTATTGCTCAACATGGTAATAGGCATGTGATTCAGGGTGCTCCTACCAAAATCGTACCATTTTTTGGTGGAAATGGGTCATCTTCTAACATGTTTGTCCATCATCAACCAAATCCTCCACAAACTCAGATATTTCCGGCACAATTTTTTGAGAATCCTATGTTGCAACcacatttatttggtttcaacAACATAGGAGGAGGAGGTGGAGGATATGGATCTTCCGGATTCTCTTGA 717 0.3877 MSSGKKTQGRQKVEIKRMTNKRDMQVTFTKRRSGLFKKASELCTLCDADVALVVFSPSEKVYSFGYPNVDTVIDRYLSRVPHQNNGTIGFVEAQRSANIHELNSQLTRINNILDIEKRRMDELSQIQNMTEAQYWWARPFDGMNRDQLEFLMKNYENMKNLIAQHGNRHVIQGAPTKIVPFFGGNGSSSNMFVHHQPNPPQTQIFPAQFFENPMLQPHLFGFNNIGGGGGGYGSSGFS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02453 238 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tsu07g02453 238 Coils Coil 148 168 - -
Tsu07g02453 238 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
Tsu07g02453 238 PANTHER MADS BOX PROTEIN 7 181 - -
Tsu07g02453 238 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tsu07g02453 238 Gene3D - 88 168 - -
Tsu07g02453 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tsu07g02453 238 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Tsu07g02453 238 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 181 - -
Tsu07g02453 238 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tsu07g02453 238 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tsu07g02453 238 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tsu07g02453 238 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02453 Tsu-Chr7 28072687 28073403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02453 5 190 Type I MADS-box Gene Family AT5G60440 46.316 7.76e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu07g02453 SRF-TF 2.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02453 - - mtr:MTR_1g105905 279.256