Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02428 ATGTTAGGAGAAGAAGGAAAAGAGAAACCCTCCCCTATCAGGAGAACCTATTCACGTTCAGTTTCATGGACAGATCGTTCTCCGAATAGTCGTAAACCGCCGCCTGGAAATAGTAAACCACGGCCACTTTTACCACCTCTGCAACCTCTCTCAATCAACAAACGTAGCGTTGAAGAATGGCCAAGTGCTGGATCTGATGATCTTGGTGTTTGGCCTCTTCCACAAACTCCAAGAGGGTCTATTACAATCAATGAACCTACCAAAGATTTTCAGTTCAAAAGAGATAAGTTAGCTTTCTTTGACAAAGAGTGTTCCAGAATTGCAGAACATATTTACTTGGGAAGTGACACGGTTGCTAAAAACCATGATCTTCTTAGACAGAAAGGAATAACTCATGTGCTTAACTGTGTTGGATTTGTTTGTCCTGAGTATTTcaaaagtgattttgtttataaaacaCTTTGGTTGCAAGATAGTCCAACAGAGGATATAACATGTATTCTCTATGATGTGTTTGATTACTTTGAGGATGTTAGAGAACAAGGCGGTCGTGTTCTTGTTCATTGTTGTCAAGGGGTTTCTCGATCGACCGCTTTGGTGATTGCTTATCTCATGTGGAGGAAAGGACAAAGCTTTGAAGATGCTTTTCAGTTTGTGAAAACTGCTAGAGGAGTCACAAATCCAAACATGGGTTTTGCTTGTCAACTCTTGCAGTGTCAGAAACGTGTACATGCTATGCCTGCAAGTCCTAGTTCTATTCTAAGGATGTATCGAATGGCTCCTCACTCTCCTTATGACCCTCTTCATCTTGTTCCTAAGATGGTTAACCAACCAGGTTCATTAGCACTTGATTCTCGCGGTGCTTTCATTGTTCATGTTCCTTCTGCTATTTATGTATGGATTGGGAAAAATTGTAACTTGTTCATGTCATGCAATGCAAAGAGTGCTGCTTTTCAGGTCGTGCGTTACGAGGGAGCAAAGGGTCCAATTCTGAGCATCCGTGAAGATCAAGAATCAACCGAGTTTTGGATTGCTCTTTCTGACGAGCAGCGTTTGTCAGATGGTTCTGATAAACAACTGGTATTGCCTTCTGAAAAGATGGAGATTGCTAGTCTAAGAAAAGTTGATGCTTATGATTTGGATTTTGAGATTTTCGACAAGGCAGTTTCTGGTGGGGTTGTTCCGCCTTTTTCTGTAGCTAATGCTGGATCAGAAACTTGTCTTCCTGCTAAAGAACATGGTTGGGCAAGATTGAGGAAGAAATTTGCCAGTGGTGACATGAAAGAAATCTTAACATCCCCTAAGTGGAAGTGTGATGTGATTATGGAGGAAGAAAAACAAGATTTTGTAGCTGATGATGATGATCCTTTCTCAGCTTCACCATCATCAAACCATCCCAGTGAATGTGGTTCCCCGGATTCCTTTGAATGTTATCCAACCAACTTAGGTAAGGCAAAAGATATTGATGAAGACATGAACATGGCCGAATCTGATCATGGTGTTGCATCTTTGCTGCCACTATCTCCTTCTTTTCCTTGTTATCTAAGCAGCAGCCCAAAATTCAATTACAAGTCGCCAACACTTTCACCTTCAAGTTCTGACTATGCAAGTTCATTTACATTTTCACCTTCCTCTACCAATTGGTCAGACCTGTCATTCATGTCTTCTCGACAGCCATCACCATCTGGCCATGAATCAGTTGAACCTTTTTATGTTAAAGATGTGTCTTTCTCAACAAGTTCCTCTTTACTTAACAAAGAAGTTCTCTCTTTGCCGTCAGAGTCATTTTCGACTGATCACACCTTGGGAGGGGAAAACTCCTATTTGCCATCCAAAGGATCTTTTCTCTCTATTGCAGCACGAAGAGGGAGCCATATACCACCTCCGATGTTGCTGACCTCTGTCAATGAATCCTCTAAAGTCCGTAAGAACCTGGAGGAATGCACCTACTAA 1953 0.4127 MLGEEGKEKPSPIRRTYSRSVSWTDRSPNSRKPPPGNSKPRPLLPPLQPLSINKRSVEEWPSAGSDDLGVWPLPQTPRGSITINEPTKDFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHDLLRQKGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPTEDITCILYDVFDYFEDVREQGGRVLVHCCQGVSRSTALVIAYLMWRKGQSFEDAFQFVKTARGVTNPNMGFACQLLQCQKRVHAMPASPSSILRMYRMAPHSPYDPLHLVPKMVNQPGSLALDSRGAFIVHVPSAIYVWIGKNCNLFMSCNAKSAAFQVVRYEGAKGPILSIREDQESTEFWIALSDEQRLSDGSDKQLVLPSEKMEIASLRKVDAYDLDFEIFDKAVSGGVVPPFSVANAGSETCLPAKEHGWARLRKKFASGDMKEILTSPKWKCDVIMEEEKQDFVADDDDPFSASPSSNHPSECGSPDSFECYPTNLGKAKDIDEDMNMAESDHGVASLLPLSPSFPCYLSSSPKFNYKSPTLSPSSSDYASSFTFSPSSTNWSDLSFMSSRQPSPSGHESVEPFYVKDVSFSTSSSLLNKEVLSLPSESFSTDHTLGGENSYLPSKGSFLSIAARRGSHIPPPMLLTSVNESSKVRKNLEECTY 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02428 650 Gene3D Protein tyrosine phosphatase superfamily 83 245 IPR029021 -
Tsu07g02428 650 MobiDBLite consensus disorder prediction 33 47 - -
Tsu07g02428 650 ProSiteProfiles Dual specificity protein phosphatase domain profile. 103 245 IPR020422 GO:0006470|GO:0008138
Tsu07g02428 650 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 14 593 - -
Tsu07g02428 650 SMART dsp_5 103 242 IPR020422 GO:0006470|GO:0008138
Tsu07g02428 650 CDD DSP 104 238 - -
Tsu07g02428 650 Pfam Dual specificity phosphatase, catalytic domain 111 241 IPR000340 GO:0008138|GO:0016311
Tsu07g02428 650 MobiDBLite consensus disorder prediction 451 473 - -
Tsu07g02428 650 MobiDBLite consensus disorder prediction 1 78 - -
Tsu07g02428 650 Gene3D Severin 256 353 IPR029006 -
Tsu07g02428 650 PANTHER MKPA PROTEIN 14 593 - -
Tsu07g02428 650 ProSitePatterns Tyrosine specific protein phosphatases active site. 187 197 IPR016130 GO:0016311|GO:0016791
Tsu07g02428 650 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 93 245 IPR029021 -
Tsu07g02428 650 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 223 IPR000387 GO:0016311|GO:0016791
Tsu07g02428 650 MobiDBLite consensus disorder prediction 15 32 - -
Tsu07g02428 650 SUPERFAMILY Actin depolymerizing proteins 250 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02428 Tsu-Chr7 27792953 27795776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02428 37 139 Protein tyrosine phosphatase (PTP) family AT3G55270 52.586 2.73e-31 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02428 - - lja:Lj6g3v0574850.1 930.628