LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu07g02385	ATGCGAAAGCTTTTGATTGCCGTGTCCCTTTGCGTTGTTTTCATGGCTGTTGAGGTAGTTGGTGGTATTAAGGCTAACAGTCTTGCAATACTGACTGATGCAGCACATTTACTTTCAGATGTTGCTGCATTTGCCATCTCCTTATTTTCTATATGGGCTGGGGGATGGGAACCGAATCCTCGTCAGTCATTTGGATTTTTTCGAATTGAGATTCTTGGTGCTCTGGTTTCGATGCAATTAATATGGCTGCTTGCTGGAATTCTGGTTTATGAAGCCATTGCTAGACTCATTGCAGGTCCTCAAAATGTGGATGGTTTTTTAATGTTTGTAGTTGCAGCATTTGGTCTTGTGGTTAACATCATTATGGCTTTGGTATTGGGTCACGATCACGGCCACGGACATGGACATGATCACGGCCACGGACATGACCATCATGGCCACAGCCATGGTCTTTCAGTTTCTACCAATCGTGATGTAAAGCATACAAAAGATGAGCATCATCACACACATGGCGATCACACTCACCATCATGATGATGAAAAGCATTCAAAAGATGAACACCACCATACTCATGAAGATCATGCACATCATGACCATGACCACAAAGAGGTTACTGAACCACTTCTTGGTGAATCAAAACCAAGATCTGAGAAGAAACGAAACATAAATATACACGGGGCATATCTCCATGTACTTGGGGACTCTATCCAGAGTATTGGAGTGATGATTGGTGGAGCAATCATATGGTATAAACCTGAATGGAAAATTGTTGATTTGATTTGCACTCTAATATTTTCTGTAATTGTTTTGGCCACAACTATCAACATGCTGAGAAACATTTTGGAAGTCCTGATGGAGAGCACCCCGCGTGAGATAGATGCTACCCAGCTTCAAAAGGGGTTATTGGAGATGGAAGATGTAGTGGCTGTTCATGAGCTGCACATATGGGCCATTACAGTTGGGAAGATATTGCTAGCTTGTCATGTTAAAATCAATCCTGAAGCAGATGCCGACATAATGTTGGACAAGGTTATAGACTACATCAAGAGGGTTCATAACATAAGTCATGTAACTATACAGATCGAACgctag	1092	0.4176	MRKLLIAVSLCVVFMAVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSIWAGGWEPNPRQSFGFFRIEILGALVSMQLIWLLAGILVYEAIARLIAGPQNVDGFLMFVVAAFGLVVNIIMALVLGHDHGHGHGHDHGHGHDHHGHSHGLSVSTNRDVKHTKDEHHHTHGDHTHHHDDEKHSKDEHHHTHEDHAHHDHDHKEVTEPLLGESKPRSEKKRNINIHGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLATTINMLRNILEVLMESTPREIDATQLQKGLLEMEDVVAVHELHIWAITVGKILLACHVKINPEADADIMLDKVIDYIKRVHNISHVTIQIER	363

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu07g02385	363	Pfam	Cation efflux family	4	285	IPR002524	GO:0006812\|GO:0008324\|GO:0016021\|GO:0055085
	Tsu07g02385	363	PANTHER	METAL TOLERANCE PROTEIN A1	1	363	-	-
	Tsu07g02385	363	TIGRFAM	CDF: cation diffusion facilitator family transporter	2	363	IPR002524	GO:0006812\|GO:0008324\|GO:0016021\|GO:0055085
	Tsu07g02385	363	PANTHER	CATION EFFLUX PROTEIN/ ZINC TRANSPORTER	1	363	-	-
	Tsu07g02385	363	MobiDBLite	consensus disorder prediction	132	217	-	-
	Tsu07g02385	363	MobiDBLite	consensus disorder prediction	144	217	-	-
	Tsu07g02385	363	SUPERFAMILY	Cation efflux protein cytoplasmic domain-like	292	362	IPR036837	-
	Tsu07g02385	363	SUPERFAMILY	Cation efflux protein transmembrane domain-like	2	286	IPR027469	-
	Tsu07g02385	363	Gene3D	Cation efflux protein transmembrane domain	1	284	IPR027469	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu07g02385	Tsu-Chr7	27180659	27181750	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu07g02385	1	363	Inorganic Solute Cotransporters	AT3G58810	67.493	8.57e-154	436

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu07g02385	K14689		-	gmx:100794876	489.574

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