Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02381 ATGAAAGAATGCAATCATCCAACTGAGGCCCAACGACGACAATTGGCTGAGGAGCTTGGGCTTCAGCCCAAACAAATCAAGTTCTGGTTCCAGAACAGGAGAACTTTGTTGAAGAATCAATACGAgaaacaaaataacaataatattcgATCGGAGAATGAAAGGCTTCGCAATGAAAACCTCCTAATGAAACATGCACTGGAGGCCACAAAGTGTGAACCTTGTGGGGGTCCCCCGTTTCCAAGGGAAGAGCATCAACATTACATGCAAAAGATGCAACAAGAAAATTACCAGCTTCAAGAAGAGTGTGAAAAAAAGTCCAACATTCTTACAAGTTTCATGGAGAGAAAAATTTCTCGACCTATGTTTGAGCATGCTCTTAATTCTATACAAGCATTTTCAAGTAACAATGAACTTGAAAACCCATCATTGGTTCATGGAAGATCAAGTAATGTTTATGGTCTTAGTAATCTAACGATGAGGGGAGCTATGTTAGTGAATAGACCAACACAAAATTATGATGAAGAAAAGACAATGTTATCTGAACATGCAATTCTTGCTATGCAAGAATTGGTTAGGCTTGTTAGAACTAACGAGCCTTTCTGGATCGACATTTCAAATACTCATCAAGATGGGCGATACACTCTTGACCATGAAAGTTATTATCAAGTTTTTCCCAAGAACAATCACATTAGAGGTGATACTGTTTCTGAAGAATCTTCAAAGTATTCCGGAGTAGTTGGGTTTAATGGCATGAAATTGGTTGAAATGTTTCTCGACTCGgaCCAATGGGAAAACTTGTTCCCAACAATTGTTACTAAAGCGGAAATTACCAAAGTGCTTGAAAGTGGTTCACCAGGAAATCGAGATGGAGCTTTGTTGTtgATGAATGAAGAAATGCATATTTTATCACCTCTAGTGCGGCCTCGCGAATTTAACATAATTCGCTATTGCAAACTAGTTGATGTTGGTGTATGGGTGATAACTGATGTATCATTTGATTCTTCTCAGCCTAACACACCAACTCTTTCTCGCTCTTGGAAACATCCTTCTGGATGTATAATTCATGAAATGCCTAACAAGTCTTGTTTGGTTACTTGGGTTGAGCATGTGGAAGTGGAAGATATGTTTCATACACACCACATATTTAGAGATTTTGTTGGTAACTATACGTTATATGGAGCTGAAAGCTGGATTAAGGAGCTTCAAAGAATGTGCGACAGATCTTTCAATTTTTATGCTGAAACTGTACCTGTTGAGGAATCTATAGGAGTTATCCAAACAATTGAAGGAAGGAGAAGTGTGATTAATCTTGCTCATAGAATGGTTAAGATTTTCTGCGAATGTTTAACAATGGCTGGTCAATTAGAGTTCTCACATTTGAATCTTGAAAGTAGCATTGGTGGGGTTAGAGTCTCTCTTCGCGAAGCCACTAACATAGGCCAACCAAATGGCATAGTTGTTGCTGCTGCTACCACCCTTTGGCTCCCTCTACCGGCTGATTATGTTTTTGAATTCCTCAAAAACCCTACAAAAAGATATCAGTGGGATATTATGGCTTGTGAAAATGCAATGTATGAGATGGGCCACATTTCAAATGGACTCTATCCTGGTAACCACACTTCGATTTTTCAGgtGAACCAGCCATACATCCCAAGTGAGAACTACTCAGTGATTTTACAAGAAAGTTTCACATCTCATGTGGGATCATATGTTATATATGCTCCAATAGATACATTATCTCTGAGTGCAGCCATAAGGGGTGAAGACTCAGCAAACATACAAATCCTTCCAAGTGGATTTGTTGTGTGTTCATATGCACAACCAAATGCAACTTTTGAAGCATTTAACAACATTGCAAGTAGTAGTGGTGGTGGGGGTGTTGAAAGAGTAGGAGCTGGCACATTGTTGACTTTGGCCTACCAAATTTTGACATGTAGCCCAAATGGAATTCATCAGCACCAAAACATGGAAGCTATTGCTACTATTAACACCCTTTTGTCCACTAGTGTTCTAAAAGTAAGGGGTGCTCTCATGAACTACTCTAATTAA 2052 0.3865 MKECNHPTEAQRRQLAEELGLQPKQIKFWFQNRRTLLKNQYEKQNNNNIRSENERLRNENLLMKHALEATKCEPCGGPPFPREEHQHYMQKMQQENYQLQEECEKKSNILTSFMERKISRPMFEHALNSIQAFSSNNELENPSLVHGRSSNVYGLSNLTMRGAMLVNRPTQNYDEEKTMLSEHAILAMQELVRLVRTNEPFWIDISNTHQDGRYTLDHESYYQVFPKNNHIRGDTVSEESSKYSGVVGFNGMKLVEMFLDSDQWENLFPTIVTKAEITKVLESGSPGNRDGALLLMNEEMHILSPLVRPREFNIIRYCKLVDVGVWVITDVSFDSSQPNTPTLSRSWKHPSGCIIHEMPNKSCLVTWVEHVEVEDMFHTHHIFRDFVGNYTLYGAESWIKELQRMCDRSFNFYAETVPVEESIGVIQTIEGRRSVINLAHRMVKIFCECLTMAGQLEFSHLNLESSIGGVRVSLREATNIGQPNGIVVAAATTLWLPLPADYVFEFLKNPTKRYQWDIMACENAMYEMGHISNGLYPGNHTSIFQVNQPYIPSENYSVILQESFTSHVGSYVIYAPIDTLSLSAAIRGEDSANIQILPSGFVVCSYAQPNATFEAFNNIASSSGGGGVERVGAGTLLTLAYQILTCSPNGIHQHQNMEAIATINTLLSTSVLKVRGALMNYSN 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02381 683 Pfam Homeodomain 3 38 IPR001356 GO:0003677
Tsu07g02381 683 CDD homeodomain 2 40 IPR001356 GO:0003677
Tsu07g02381 683 SUPERFAMILY Homeodomain-like 3 48 IPR009057 -
Tsu07g02381 683 SMART HOX_1 1 44 IPR001356 GO:0003677
Tsu07g02381 683 Gene3D - 1 38 - -
Tsu07g02381 683 SMART START_1 182 408 IPR002913 GO:0008289
Tsu07g02381 683 ProSiteProfiles START domain profile. 173 411 IPR002913 GO:0008289
Tsu07g02381 683 ProSitePatterns 'Homeobox' domain signature. 15 38 IPR017970 GO:0000981|GO:0006355
Tsu07g02381 683 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 680 IPR042160 -
Tsu07g02381 683 ProSiteProfiles 'Homeobox' domain profile. 1 40 IPR001356 GO:0003677
Tsu07g02381 683 Pfam START domain 187 407 IPR002913 GO:0008289
Tsu07g02381 683 Coils Coil 82 109 - -
Tsu07g02381 683 CDD START_ArGLABRA2_like 177 406 - -
Tsu07g02381 683 Coils Coil 34 59 - -
Tsu07g02381 683 Gene3D - 186 391 IPR023393 -
Tsu07g02381 683 SUPERFAMILY Bet v1-like 431 610 - -
Tsu07g02381 683 SUPERFAMILY Bet v1-like 173 408 - -
Tsu07g02381 683 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 1 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02381 Tsu-Chr7 27152977 27157262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02381 2 678 Homeobox Transcription Factor Family AT1G73360 37.553 3.28e-147 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu07g02381 START 2.4e-30 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02381 K09338 - gmx:100795075 660.218