Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02371 ATGGAGTGGGACAGCAATTCGGATCTTAGCGGTGATGAAGACGACGCCGtttcatcttcttttcttctAAACGACGACGTTGGACCACTTCCTTTTCCTGTTCTACAAACCGCACCTTGTGGCTTTGTTGTCACCGACGCTATCGATCCAGATCATCCTATTATATATGTGAACGCCGTTTTCGAGATGCTTACTGGTTATCGTGCTGAAGAAGTTCTCGGTCGTAActgCCGTTTCTTGCAGTGTCGAGGTCCTTTCGCTAAGAGAAGGCATCCATTGGTGGACTCATCAGTAATTTCTGAAATTAGAAGATGCCTTGATGAAGGGATTGAATTTCAAGGTGAATTGTTGAATTTCAGGAAAGATGGATCTCCACTTATGAACAGATTACGGCTGACACCTATATTTGGAGAAGATGATGAGATTACTCATGTCATTGGAATTCAGTTATTCACAGAGGCAAACATTGATCTTGGTCCTGTTCCCGGTTCTACAATTAAGGAATCTTTTAAGTCATCTGGTCGGTTTCATTCTGTACTTTCCTCATTGCACCCTCTTTCAGTGGGGGACCGAAATGTGACTCGTGGAATTTGTGGTATATTTCAATTGAGTGATGAGGTATTGTCTCTCAAGATACTTGCTCGCTTAACTCCAAGAGACATTGCATCGGTTAGTTCTGTTTGTAGGCGATTGTACGAGGTAACAAGAAATGAAGACCTTTGGAGAATGGTATGCCAAAATGCATGGGGGAGTGAAACTACTCGTGTTTTGGAGACTGTTCCTGGTGCAAAGAGACTTGGATGGGGACGACTAGCAAGGGAACTGACCACTCTTGAAGCAGCAGCATGGAGGAAACTGACTGTCGGAGGTGGTGTTGAACCCTCACGTTGCAATTTTAGTGCTTGTGCAGTTGGAAATAGAGTTGTCCTATTTGGTGGTGAAGGAGTTAATATGCAACCCATGAATGACACCTTTGTATTGGATCTCAATGCTAATAATCCTGAATGGCAGCATGTCCAGGTTAGCTCTCCTCCCCCTGGTCGGTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCGTTTGGTTGTATTTGGAGGCTGTGGAACACAGGGCTTGCTCAATGATGTGTTTGTTCTGGACTTGGATGCAACCCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCAAGATCATGGCATAGCTCTTGTACTCTTGATGGTACTAAGTTGATAGTTTCCGGTGGCTGTGCTGATTCCGGAGTACTTCTGAGTGATACTTTCCTCCTTGATATGTCAATGGAAAACCCTGTTTGGAGGGAGATACCAGTGACATGGACACCACCTTCCCGTCTGGGCCACACACTATCTGTTTATGGTGGTAGGAAAATTCTGATGTTTGGAGGTCTGGCCAAGAGTGGGCCCCTGCGTTTCCGGTCAAGTGACGTGTTCACGATGGATTTAAGTGAGGATGAACCATGCTGGAGATGTGTAACGGGGAGTGGAATGCCTGGTGCTGGCAATCCTGGGGGCCTTCATTCTGCCTCCCAGCTTTACATACTTGATCCAACCGATGAGAAGCCTACATGGAGAATTCTAAATGTACCTGGTCGCCCTCCAAGGTTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTTCTGGGTGGTCAAACCGGGGAGGAATGGATGCTAAGTGAATTGCATGAACTTTCCCTGGCAAATTCTGTCATCTAG 1755 0.4564 MEWDSNSDLSGDEDDAVSSSFLLNDDVGPLPFPVLQTAPCGFVVTDAIDPDHPIIYVNAVFEMLTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSSVISEIRRCLDEGIEFQGELLNFRKDGSPLMNRLRLTPIFGEDDEITHVIGIQLFTEANIDLGPVPGSTIKESFKSSGRFHSVLSSLHPLSVGDRNVTRGICGIFQLSDEVLSLKILARLTPRDIASVSSVCRRLYEVTRNEDLWRMVCQNAWGSETTRVLETVPGAKRLGWGRLARELTTLEAAAWRKLTVGGGVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNANNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGTQGLLNDVFVLDLDATPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDMSMENPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEDEPCWRCVTGSGMPGAGNPGGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLANSVI 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02371 584 Gene3D - 198 244 - -
Tsu07g02371 584 PANTHER ADAGIO PROTEIN 1-LIKE 1 513 - -
Tsu07g02371 584 TIGRFAM sensory_box: PAS domain S-box protein 48 148 IPR000014 -
Tsu07g02371 584 Pfam PAS domain 39 148 IPR000014 -
Tsu07g02371 584 PANTHER ADAGIO PROTEIN 1-LIKE 513 583 - -
Tsu07g02371 584 SUPERFAMILY F-box domain 191 261 IPR036047 GO:0005515
Tsu07g02371 584 Pfam Kelch motif 453 504 IPR011498 GO:0005515
Tsu07g02371 584 Gene3D PAS domain 32 160 - -
Tsu07g02371 584 Gene3D - 272 518 IPR015915 GO:0005515
Tsu07g02371 584 Pfam F-box-like 208 246 IPR001810 GO:0005515
Tsu07g02371 584 CDD PAS 38 148 IPR000014 -
Tsu07g02371 584 Pfam Galactose oxidase, central domain 358 407 - -
Tsu07g02371 584 ProSiteProfiles SRCR domain profile. 214 257 IPR001190 GO:0005044|GO:0016020
Tsu07g02371 584 Pfam Galactose oxidase, central domain 296 346 - -
Tsu07g02371 584 ProSiteProfiles PAS repeat profile. 47 109 IPR000014 -
Tsu07g02371 584 SUPERFAMILY PYP-like sensor domain (PAS domain) 38 149 IPR035965 -
Tsu07g02371 584 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 513 - -
Tsu07g02371 584 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 513 583 - -
Tsu07g02371 584 SUPERFAMILY Kelch motif 283 578 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02371 Tsu-Chr7 27065901 27076745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02371 34 175 AGC Kinase Gene Family AT5G58140 35.616 4.09e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02371 K12115 - gmx:100802828 1089.72