Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02323 ATGGGAATGAATCAAAATTTCTACTCTACAACGGGAGAAGAATACATTGATGAAAGCCTTTCATACCATTTTCCAACTTCAGAAATAAGCCGATCGTTTTCGCGTCGAAGGAGAGACTATAAAGGCTCTCACTTAAGAAAATCTTTGAAGCCTAAGAGGGGTCATGCTCAAGTTGAAATTAGTAGAAATCTTAGTTATAAGAATAAAAGGAATCATAGTATTAGAGATCAAAGTTACACAAGTAATGCAAATATTAAGCATGGTAATTACAAAGGCACAATTCATGACATTAAGGTAACACAAACATCAAAGTTTGCTAGAAAAGAACTTGAGGAAGTTAGCTCCGATTTTATTCTAGCAATTGGCTTGCAAGAACAAGAGCTAGAGAGAACAACATTCACAAACCTAGCAACCATTGAAAGTGAAAGCGACGAAGATGTAACCGAGTCATCTTTTAGTAATGATGATATTAATGATGCTGATTTTTCATTTAGTCAGGAGTTCGAAACCGATCTTCAGTTTCTTGAAGGTGAAGGAAGcaatattgatgatgaagacGATGACTACGATGAAATGGAAGAAGATGAGATTGATCCAGATGAATTATCTTATGAAGAGTTAATTGAGTTAGGAGATTTTATAGGAGAAGAAAAAAGAGGATTATCACCTAATGAAATCTCTTCTTGCTTATATCCTTATACTTGCAAAATTGCTGAAAGAAAAAGTGGAATTGATCGTTGTGTGATTTGTCAAATTGAATATGAAGAAGGTGAAGCCATAGTTGTACTTCATTGTGATCATCCTTATCATACGGATTGTATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCAATTTGTAGCAATGAAGTATCAACTCCAAACAAGGCTAAGAATACTTGA 903 0.3378 MGMNQNFYSTTGEEYIDESLSYHFPTSEISRSFSRRRRDYKGSHLRKSLKPKRGHAQVEISRNLSYKNKRNHSIRDQSYTSNANIKHGNYKGTIHDIKVTQTSKFARKELEEVSSDFILAIGLQEQELERTTFTNLATIESESDEDVTESSFSNDDINDADFSFSQEFETDLQFLEGEGSNIDDEDDDYDEMEEDEIDPDELSYEELIELGDFIGEEKRGLSPNEISSCLYPYTCKIAERKSGIDRCVICQIEYEEGEAIVVLHCDHPYHTDCISKWLQIKKVCPICSNEVSTPNKAKNT 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02323 300 SUPERFAMILY RING/U-box 246 294 - -
Tsu07g02323 300 ProSiteProfiles Zinc finger RING-type profile. 247 288 IPR001841 -
Tsu07g02323 300 SMART ring_2 247 287 IPR001841 -
Tsu07g02323 300 Pfam Ring finger domain 246 287 IPR001841 -
Tsu07g02323 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 300 IPR013083 -
Tsu07g02323 300 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 102 296 - -
Tsu07g02323 300 MobiDBLite consensus disorder prediction 38 58 - -
Tsu07g02323 300 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 102 296 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02323 Tsu-Chr7 26321523 26323243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02323 194 291 C3H Transcription Factor Family AT3G63530 48.515 8.68e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02323 K19045 - gmx:100526881 268.085