Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02313 ATGAGAGCATGTATCTTTGAAAGCTCGATGTCTGTTCTGGTTAATGGTAGTCCTACTGCCGATTTCAATGTTGGAAGAGGATTACGACAAGGCGATCCGTTGTCCCCTTTCTTATTCTTAATTGTTGCCGAACGTTTAACTGGATTGATGAGAAAAGACGTGGAGTTAGGGAAATTTAAGGGGTATcgtcttaataataatattcaatttcagATTCTTCAGTTCGCCGACGATACTATTTTGATGGGAGAAGGTATTTGGGACAATGTCCGAATCATTAAAACTTTACTTTGCAACTTTGAGTTAGTCTCAAGATCAATTTGTGAAAAGGATACTCATCTAACCGGAGCTAAGCACTCGATCTGGTGGAAGGACGTAATAAGTTTGGGCAGAGGTTTTGAGGCTGACTCGTTTAAGCAACATATCGGATGTCGCATTGGTAATGGCCGAGACATTGGTTTTTGGAAGTTCAAATGGTTTGGGAGTCATGCTTTTAAAGACTTATTTCCTACTCTTTTTGCTAAAGAGACTAACCACGAAGTTTTCATAGCAGGGAGGATGCAAGGAAATGGTAGAAATCTTGTGTGGTCCTGGCAATGGGTTGAACAACTATCCGTGGACGAAGAACAACAGTTGGGAGAGTTAAAGGAGTTGTTGCTTCTGCTTATTTCTCAAGTTTGCTATAGAGGTGTATTGAAGGCTGATTTAATTGGCGTGCGGATAAGTCTATCGAGTATGAATTCACCGTCCGCGCAGTTTGTTTCCTCGAGAAGGATGAGTGTGTATGATCCTATCCACCAGATTAATATGTGGGGAGAAGGTTTCAAAAGTAACGGAAATTTAAGCGCGTCCATACCGCTAATTGATGAGGTGGACTTGAAGTTTGATAGTAGTCAGTCAGAAGATGCTTCTCATGGTATACTCGGAACATCTAACAAGTATGATCAAGAAGCTAGTAGACCTATTGATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTCTGAGGAAAAAGGCTTATGTGCAGCAGCTAGAATCAAGTCGTTTGAAGTTGGTGCAGTTGGAGCAAGAGCTTGAACGCGTAAGACAGCAGGGAATGTATATGGCTGGTGGATTGGATTCTAATAATATGTGTTTTGCTGGACCTATGAATTCAGGAATTGCAGCCTTTGAGATGGAGTATGGACATTGGGTTGATGAGCAAAACCGGCAAATTTCAGAAATGAGAAATGCTTTAAACTCGCATATTAGTGACATAGAGCTCAGGATTCTGGTTGATGGTATGATGAATCACTATGCTGAAATCTATCGCATGAAGTCTGCGGCTGCAAAAGCAGATGTTTTTTATGTTATGTCCGGCATGTGGAAAACAACAGCTGAACGGTTTTTCTTGTGGATCGGTGGTTTTCGCCCCTCTGAGCTTCTCAAGATTCTTGGTCCAATGATTGAACCCTTGACGGAGCAGCAACGATTGGATATTGATAACCTCGGACAATCATGTCAACAGGCAGAAGATGCTCTTTCACAAGGCATGGAGAAACTCCGGCAAACACTCGCTGATAGTGTAGCAGCTGGACAATTCATTGAAGGAACGTATATTCCGCAGATGGCCACTGCAATGGAGAAGTTAAAAGCTCTTGTATGCTTTGTGAATCAGGCTGACCATCTTCGGCAGGAAACCTTGCAGCAAATGTCGCGAATACTTACAATCCGTCAGTCAGCTCGATGCTTACTTGCTTTAGGAGAATATTTCCAACGCCTAAGGGCTTTGAGCTCACTATGGTCTAATCGACCCCGTGAACCAGCTTAG 1827 0.422 MRACIFESSMSVLVNGSPTADFNVGRGLRQGDPLSPFLFLIVAERLTGLMRKDVELGKFKGYRLNNNIQFQILQFADDTILMGEGIWDNVRIIKTLLCNFELVSRSICEKDTHLTGAKHSIWWKDVISLGRGFEADSFKQHIGCRIGNGRDIGFWKFKWFGSHAFKDLFPTLFAKETNHEVFIAGRMQGNGRNLVWSWQWVEQLSVDEEQQLGELKELLLLLISQVCYRGVLKADLIGVRISLSSMNSPSAQFVSSRRMSVYDPIHQINMWGEGFKSNGNLSASIPLIDEVDLKFDSSQSEDASHGILGTSNKYDQEASRPIDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLVQLEQELERVRQQGMYMAGGLDSNNMCFAGPMNSGIAAFEMEYGHWVDEQNRQISEMRNALNSHISDIELRILVDGMMNHYAEIYRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKILGPMIEPLTEQQRLDIDNLGQSCQQAEDALSQGMEKLRQTLADSVAAGQFIEGTYIPQMATAMEKLKALVCFVNQADHLRQETLQQMSRILTIRQSARCLLALGEYFQRLRALSSLWSNRPREPA 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02313 608 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 327 342 IPR004827 GO:0003700|GO:0006355
Tsu07g02313 608 Pfam Seed dormancy control 410 484 IPR025422 GO:0006351|GO:0043565
Tsu07g02313 608 Pfam bZIP transcription factor 324 362 IPR004827 GO:0003700|GO:0006355
Tsu07g02313 608 CDD bZIP_HBP1b-like 324 376 - -
Tsu07g02313 608 Gene3D - 323 374 - -
Tsu07g02313 608 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 1 128 IPR000477 -
Tsu07g02313 608 MobiDBLite consensus disorder prediction 301 321 - -
Tsu07g02313 608 ProSiteProfiles DOG1 domain profile. 393 603 IPR025422 GO:0006351|GO:0043565
Tsu07g02313 608 SUPERFAMILY Leucine zipper domain 324 367 IPR046347 GO:0003700|GO:0006355
Tsu07g02313 608 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 322 366 IPR004827 GO:0003700|GO:0006355
Tsu07g02313 608 MobiDBLite consensus disorder prediction 301 316 - -
Tsu07g02313 608 PANTHER TRANSCRIPTION FACTOR TGA1 246 607 - -
Tsu07g02313 608 Coils Coil 343 370 - -
Tsu07g02313 608 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 2 96 IPR000477 -
Tsu07g02313 608 Coils Coil 404 424 - -
Tsu07g02313 608 PANTHER TRANSCRIPTION FACTOR TGA9 246 607 - -
Tsu07g02313 608 SMART brlzneu 320 384 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02313 Tsu-Chr7 26211938 26219870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02313 246 608 Calmodulin-binding Proteins AT5G65210 68.207 0.0 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Tsu07g02313 RVT_1 1.4e-08 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02313 K14431 - gmx:100793353 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g02313 07 26211938 26219870 Tsu07g02313 07 26211938 26219870 ECH
Tsu02g00767 02 6420066 6422746 Tsu07g02313 07 26211938 26219870 ECH
Tsu02g00767 02 6420066 6422746 Tsu07g02313 07 26211938 26219870 PCT