LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu07g02238	ATGGATTTAGGTTGTAGTTTGCCACAGTCAAGAATTTTACACGGAGCCGTGGGGACTAGTTATAGACAAAAAAATGCAGGTCAAGTAGGTTTTCTTGATTTTAGGAGATCACATTTTAGTGCGGTGAACAATGTTAGTCGTGTTTCTTCTTGTTGGAATGATTCAAAAGTGGTTTCTGGTGGTGAGTTTAAAGTTTTGAACACAAAGAGAAGTATGTCATGTAAGAATGAGAAACTTCTTATGGGATCCAGATTCATTTGGTTGAAATGCCAGGGTAATGATTCTTTAGCTTATGTTAATGGCAATGGCCGCAATGTTGATTATGTGGAAGGTTCGGATGAGGATGCAGCAGTGTTACCTATATCTAGTGTTGAATTGGATGTTCCAGTGGAAGAAGGAGCGAGGGCTGAGAAGGAAATAGGAGTAGAGGAACAAAGTGTGGATGAATTGAAAGAACTATTGCAGAAGGCCTTGAAAGAGCTAGAAGTTGCACAAATAAATAGTACTATGTTTGAGgaaaaggttaaaaaaatatCAGAGACTGCCATCTTTTTGCATGATGAAGCAACCCGATCTTTGAATGATGTTAATTTTACCCTTGACACCATTCAAAAAGTTGCAAATGAAGAACATCAGGCCAAAGAGGCTGTCCAAAATGCTACAATGGCTCTTTCATTAGCCGAGGCAAGACTACAGGTAGCCATAGAGTCTTTAGAGGCAGCAAAAGAAGTGTATGAAGGTTCTAATGAGAGTGATGGCAGTAAGGACTTAACAGAAAAGCAGAGCACACTTTTTGTTGCACAAGAAGATATAAAGGAATGCCAGGAAACTTTGGCAAATTGTGAGGTAGAATTGAGGCGCTTGCAAAATAAAAAGGAGGAGTTGCAAAACGAAGCTAGCAAATTGCAAGAAATTGCTGAAAAGGCACAGCTGGATGCAGTGAAAGCTGAGGAGAATGTTACAAACATAATGCTTTTAGCAGAGCAAGCTGTTGCATTTGAACTTGAGGCTGCACAACGTGTGAATGATGCTGAGATTGCTTTACAGAGAGCTGATAGGTCTCTTACAAATTTGAATGCTGACACTGTAGAAGCTATACAAGTACAAGATGTCGTGCTTGTTTCTGAGGAGGAGAACAATGTAGAAAGTTTTTCTGATGATGTCACAGTTAGTAGAGACAAAGATTTGGCTACAATTGATGATGCATCTTTGCTTGCCAAGTTATCACTTGAAACAGAATCTGGAAAAACCATCCAAATTTCAGAAGACACAACACAGTCTGATTATATAAGTGATAGTGAGAATGCCATCCAAACAAAAAAGCAGGAAACACAGAAAGATTTCGCTAAGGATAGTTCACCATTTGCTCCCAAAGCATTATCTAAAAAGTCATCTCGATTCTTTTCTGCatcattcttttcttttactGAAGAGGAGGCTGAGTCAACACCAGCATCAGTTTTCCAAGGCCTCATATTATCCGCAAAGAAGCAGTTGCCCAAGCTAGTTCTTGGGTTATTGTTAATGGGAGCAGGaGCTGCTGTGTATGCCAATAGGGCAGAGAAAAATGCTCAGTTCCTTCAACAGCCAGATGTTATTTTGACCAGTGCTGAAGAATTTTCTTCTAATGCAAAGCCTCTATTTAGGAAACTCCAGAAAATCCCcaagaaaattaagaaaatcatTGCGTCGTTACCTCATCAGGAGGTGAATGAGGAAGAAGCCTCCCTCTTTGACATGCTCTGGTTATTACTTGCAAGTGTTATATTTGTgccaatatttcaaaaaattccTGGAGGTAGTCCTGTTCTTGGTTACTTGGCTGCTGGCATCTTGATTGGGCCTTATGGTCTCTCTATCATTCGTCATGTTCATGCGACAAAAGCAATAGCTGAGTTTGGAGTTGTTTTCCTTTTATTCAATATTGGCCTGGAGCTCTCTGTTGAAAGGCTCAGTTCTATGAAGAAGTATGTTTTTGGATTAGGTTCTGCGCAGGTTTTAGCAACTGCTGCAGTTGTTGGCTTGGTGGCTCATTATGTCTGTGGCCTACCTGGCCCTGCTGCTATAGTCATTGGGAATGGCCTGGCTTTATCATCCACTGCCGTTGTTCTGCAGGTGTTGCAGGAAAGAGGCGAGAGCACATCACGGCATGGGCGAGCTACATTttctgttttactttttcagGATTTGGCTGTTGTAGTCTTACTAATACTCATACCTCTTATTTCACCAAATTCTTCCAAAGGAGGGGTTGGTTTTCAAGCCATTGCTGAAGCTCTTGGACTGGCAGCTGTTAAGGCAGCAGTTGCCATTACTGCCATAATTGCAGGTGGACGATTGCTCCTTCGGCCAATATACAAGCAAGTTGCAGAAAATCAAAATGCTGAAATCTTCTCAGCCAATACACTTCTTGTTATTCTTGGGACCAGTCTTCTTACCGCCAGGGCAGGACTTTCAATGGCACTGGGAGCATTTTTGGCTGGTTTATTACTGGCAGAAACTGAATTTTCCCTGCAGGTTGAATCTGATATTGCACCATACCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGGTTGGAATGTCAATCGATCCAAAACTTTTTGTTTCAAACTTCCCAGTCGTCACGGGGACATTGGCACTCTTAATATGCGGAAAGACTATCTTAGTTTCTATGATGGGTAGAATCTTTGGGATTTCCATCATTTCAGCTTTAAGAGCTGGTCTTCTTCTTGCTCCTGGTGGAGAGTTTGCATTTGTAGCTTTTGGTGAAGCTGTTAATcagGGCATAATGTCTTCTCAGCTATCTTCTTTGCTGTTTCTTGTTGTGGGCATTTCAATGGCCATCACTCCATGGCTAGCTGCAGGAGGCCAGTTGATTGCTTCCCGTTTCGAGCAACATGATGTTAGAAGTTTATTACCTGTAGAAAGTGAGACAGATGATCTGCAAGATCATATCATTATTTGTGGATTTGGACGAGTTGGCCAGATCATTGCACAACTTCTTTCTGAGCGACTTATTCCATTTGTTGCACTAGATGTGAGAAGTGAAAGAGTGGCTGTTGGGCGAGCCCTGGATCTCCCTGTGTACTTTGGAGATGCTGGCAGTCGAGAGGTCCTACATAAGGTCGGGGCTGAAAGGGCATGTGCTGCAGCTATAACTCTAGATACGCCTGGAGCAAATTATAGAACAGTTTGGGCTCTGAGCAAGTACTTCCCAAATGTGAAGACTTTTGTCCGCGCCCATGACGTTGATCATGGATTGAATTTAGAGAAGGCCGGAGCTACTGCGGTGGTCCCAGAGACCTTGGAACCAAGTCTTCAACTAGCAGCCGCTGTGCTTGCTCAGgCTAAACTTCCGGCATCAGAGATTTCAGCGACAATAAATGAATTCAGATGCCGACATCTAGCTGAGCTTACAGAGCTGTGTGAAGCAAGTGGAAGTTCTCTTGGTTATGGATATACTAGAATTATGAGTAAATCCAAATCTCAATCCCCAGATACATTAGATTTAGATGAGACACAAGTCTCTGAAGGGACACTGGCAGTATGA	3552	0.4144	MDLGCSLPQSRILHGAVGTSYRQKNAGQVGFLDFRRSHFSAVNNVSRVSSCWNDSKVVSGGEFKVLNTKRSMSCKNEKLLMGSRFIWLKCQGNDSLAYVNGNGRNVDYVEGSDEDAAVLPISSVELDVPVEEGARAEKEIGVEEQSVDELKELLQKALKELEVAQINSTMFEEKVKKISETAIFLHDEATRSLNDVNFTLDTIQKVANEEHQAKEAVQNATMALSLAEARLQVAIESLEAAKEVYEGSNESDGSKDLTEKQSTLFVAQEDIKECQETLANCEVELRRLQNKKEELQNEASKLQEIAEKAQLDAVKAEENVTNIMLLAEQAVAFELEAAQRVNDAEIALQRADRSLTNLNADTVEAIQVQDVVLVSEEENNVESFSDDVTVSRDKDLATIDDASLLAKLSLETESGKTIQISEDTTQSDYISDSENAIQTKKQETQKDFAKDSSPFAPKALSKKSSRFFSASFFSFTEEEAESTPASVFQGLILSAKKQLPKLVLGLLLMGAGAAVYANRAEKNAQFLQQPDVILTSAEEFSSNAKPLFRKLQKIPKKIKKIIASLPHQEVNEEEASLFDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHATKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLATAAVVGLVAHYVCGLPGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLFVSNFPVVTGTLALLICGKTILVSMMGRIFGISIISALRAGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMAITPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSERVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPASEISATINEFRCRHLAELTELCEASGSSLGYGYTRIMSKSKSQSPDTLDLDETQVSEGTLAV	1183

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu07g02238	1183	Gene3D	-	573	961	IPR038770	-
	Tsu07g02238	1183	Coils	Coil	271	319	-	-
	Tsu07g02238	1183	Pfam	TrkA-N domain	986	1099	IPR003148	GO:0006813
	Tsu07g02238	1183	MobiDBLite	consensus disorder prediction	1160	1183	-	-
	Tsu07g02238	1183	PANTHER	K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED	1	1183	-	-
	Tsu07g02238	1183	Gene3D	-	981	1145	-	-
	Tsu07g02238	1183	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	982	1121	IPR036291	-
	Tsu07g02238	1183	ProSiteProfiles	RCK N-terminal domain profile.	985	1107	IPR003148	GO:0006813
	Tsu07g02238	1183	Coils	Coil	224	244	-	-
	Tsu07g02238	1183	Coils	Coil	341	361	-	-
	Tsu07g02238	1183	Coils	Coil	140	167	-	-
	Tsu07g02238	1183	Pfam	Sodium/hydrogen exchanger family	583	953	IPR006153	GO:0006812\|GO:0015299\|GO:0016021\|GO:0055085
	Tsu07g02238	1183	TIGRFAM	2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family	584	864	IPR004771	GO:0006812\|GO:0008324\|GO:0016021
	Tsu07g02238	1183	PANTHER	K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC	1	1183	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu07g02238	Tsu-Chr7	25262768	25276856	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu07g02238	72	1183	Inorganic Solute Cotransporters	AT4G00630	69.646	0.0	1402

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu07g02238	-		-	gmx:100798822	1716.05