Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02232 ATGGCATTTGCTACCACACTAGTGTTCCATTTCTTGCTTCTTGCTCCAATTTTGATTTATTCTTCTCCAGTTGAAGATCCTGAATTAGTGGTCCAAGAAGTGCAAAAGAGCATAATTGAGAATCAAAACAGAAGAAAATTGGGTTATTATTCTTGTGGCACAAACAACCCAATTGATGATTGTTGGAGATGTGACCCAAATTGGGAAAATAACCGCAAACGTCTAGCTGAATGTGCTATTGGATTTGGAAGACATGCAATTGGAGGCAAAGATGGAAAATATTACATAGTAAGTGACTCAAGTGATGACCCTATAAATCCAAAACAAGGTACATTAAGACATGCTGTTATTCAACATGAACCATTATGGATCATTTTCAAACATGACATGGTTATTAATCTTAAAATGGATCTTCTCATGAATTCCTATAAAACAATTGATGGTAGAGGAGTAAATGTACACATAGCTGAAGGACCATGTATTAGGATACAACAaaagaataatattataattcatGGTATACATATTCATCATTGCGTAAGAGGTGGTAGTGGCTATGTGAGTGACTCACCTGATCATCGTGTGTTGAAAACAAGATCAGATGGTGATGGGATTACAATTTTTGGTGGGAGACATATTTGGGTGGATCATTGTTCGTTGTCTAATTGTTTTGATGGTTTGATTGATGTTGTTCATGGATCAACGGCTGTTACTATTTCTAATAATTATATGACACATCATAATAAAGTTATGCTTTTGGGACATAGTGATTCATATGATGAGGATAAAAATATGCAAGCTACTATTGCTTTTAACCATTTTGGAGAAGGGCTTGGTGGAAGAATGCCAAGATGTAGGTTCGGATACTTCCATGTGGTGAACAACGATTACACACATTGGCAACAGTACGCAATAGGTGGAAGTTCATCCCCAACTATTTTCAGTCAAGGCAACAGATTTCTAGCTCCAGATGATGATGACCACAAAGAGATCACAAAGCACTTTGACTCATCAAAGGGTGAGTGGCAGAACTGGAATTGGAGGTCTGAAGGAGATCTAATGTTGAATGGTGCATTCTTCACGCCGTCTGGAGCAGGAGCAACTTCTTCGACATACGCCAAAGCCTCAAGCATGTCAGCACGACCACCGATGCTTGTGGCTTCAATGACAGAAGGAGCTGGAGTTCTTAGATGCAAAAAGGGTTACCAATGCTACTAG 1218 0.3834 MAFATTLVFHFLLLAPILIYSSPVEDPELVVQEVQKSIIENQNRRKLGYYSCGTNNPIDDCWRCDPNWENNRKRLAECAIGFGRHAIGGKDGKYYIVSDSSDDPINPKQGTLRHAVIQHEPLWIIFKHDMVINLKMDLLMNSYKTIDGRGVNVHIAEGPCIRIQQKNNIIIHGIHIHHCVRGGSGYVSDSPDHRVLKTRSDGDGITIFGGRHIWVDHCSLSNCFDGLIDVVHGSTAVTISNNYMTHHNKVMLLGHSDSYDEDKNMQATIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQQYAIGGSSSPTIFSQGNRFLAPDDDDHKEITKHFDSSKGEWQNWNWRSEGDLMLNGAFFTPSGAGATSSTYAKASSMSARPPMLVASMTEGAGVLRCKKGYQCY 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02232 405 Pfam Pectate lyase 140 320 IPR002022 -
Tsu07g02232 405 SMART amb_all 129 326 IPR002022 -
Tsu07g02232 405 SUPERFAMILY Pectin lyase-like 31 398 IPR011050 -
Tsu07g02232 405 Gene3D - 55 397 IPR012334 -
Tsu07g02232 405 PANTHER PECTATE LYASE 3 401 - -
Tsu07g02232 405 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Tsu07g02232 405 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Tsu07g02232 405 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Tsu07g02232 405 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Tsu07g02232 405 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Tsu07g02232 405 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Tsu07g02232 405 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Tsu07g02232 405 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Tsu07g02232 405 PANTHER PECTATE LYASE 18-RELATED 3 401 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02232 Tsu-Chr7 25171195 25173669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02232 1 404 Polysaccharide Lyase AT5G63180 67.734 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02232 K01728 - gmx:100801136 691.034