Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02225 ATGGGAGAAACCGGTATCATTGCAACCTTAAACCCCACGGCTCAAGAATTTAACCCAACAAACCACATTCCTCTAACAATCGCCGTCGGTGTTCCTTATCCCTACCCACCCTACGCCGTCACACCTCCGCCGCATCTCTCTCCTATACCAACCCGTTCCATTCTTCTTAGTCCAGTCCCTCCTACCCCTGAATCAAACCTCCGAAAAGATCTCACAGCCTTCGGTGAAGTCAGAGCCGTCAATACCGATTCCTTCCGTCACGGAATCGTAACGGCTCACTTCTATGACCTAAGAAACGCTGAAACGGCGTTTACTGCTATTCGTACTCATCATGTTCACTGTGTTTCGTTCTTTAACCCGCTTTCTCATCATCAATTTTACTCTGCTCCGCCGCCGCCGGGTCTCGTCGCCGGTGTTCCTCTTTGGGCTCACTATGTTCACTCCGATGCTGAAAATCAAGGAACCCTAGTCTTATTCAACGTTGACGACAACGTTTCCGCTAATCATCTCCGTCGAATTTTCGAGCCTTTTGgTGCCATAAAGGAAGTGAGGGACACTGCAGGGAAGAAAAAGAATCAAagatttgttgaattttttgacATAAGAGATGCTGCTAAAGctatgaatgaaatgaatggaaaagaaattgatggaaaaaatgTTGCTATTGAATTTAGTAGACCAAAATTTTTCCATTCTAATTTATATGTTTCCAATAAGCCATTTCATTTAAACTTTAATCCACCACCACCTTCGCCGCGGCGTAGTTTCGGTCCTTCACCACAATTATCTCCAAAAAGTTTCACATTGAGTCCTAATGGAATTGGTGGTGAAGAACATTATGGTGCTAAGAGGAACTTTGTTAGGAGTGAAAGTAGAGAGAGCTTTGGAGAAAGAAGTTGGGTTTGGAAAGGGAAACAAATAAGGAAGCATGAAGCTCGGTTTTTTATCAAAGAAGATGCCATTGTTGAATCTGATTCTAGAACAACTCTCATGATAAAAAACATACCCAACAAGTAcagTCAGAAGCTACTGTTGAATATGTTGGACAACCACTGCAAACACTGCAATGACCAGATAGGCGACGGCGATGATCAGCCTCTATCCTCCTATGACTTTGTCTATCTTCCCATTGATTTCAAGAACAAGTGCAACGTGGGATATGGTTTTGTTAACATGACATCTCCGGAGGCAACTCTGAGACTCTACAAAGCCTTTCACCACCAAAATTGGGAGGTCTTTAACTCTAGAAAAATTTGTCAACTCACCTATGCCAGAATTCAGgGTTTGGAAGCATTGAAAGAGCATTTTAAGAACTCAAAATTCCCATGCGAAATGGAGCATTACTTACCAGTGGTATTTTCACCACCTCGAGATGGTAAGAATTTAACAGATCCAATTCCAGTAGTTGGGAACATGATAAGAGTAGTAGCTGCTGCTTCTCCTGTAGATGATGAGATGGAGGAAGGTCAAGTTCATAAAGTAGTAGGTAATGGCTACAAAAGTGGCGGCAtaggtgatgatgatgatgataaaacAGATGTGAAATGA 1551 0.4068 MGETGIIATLNPTAQEFNPTNHIPLTIAVGVPYPYPPYAVTPPPHLSPIPTRSILLSPVPPTPESNLRKDLTAFGEVRAVNTDSFRHGIVTAHFYDLRNAETAFTAIRTHHVHCVSFFNPLSHHQFYSAPPPPGLVAGVPLWAHYVHSDAENQGTLVLFNVDDNVSANHLRRIFEPFGAIKEVRDTAGKKKNQRFVEFFDIRDAAKAMNEMNGKEIDGKNVAIEFSRPKFFHSNLYVSNKPFHLNFNPPPPSPRRSFGPSPQLSPKSFTLSPNGIGGEEHYGAKRNFVRSESRESFGERSWVWKGKQIRKHEARFFIKEDAIVESDSRTTLMIKNIPNKYSQKLLLNMLDNHCKHCNDQIGDGDDQPLSSYDFVYLPIDFKNKCNVGYGFVNMTSPEATLRLYKAFHHQNWEVFNSRKICQLTYARIQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGKNLTDPIPVVGNMIRVVAAASPVDDEMEEGQVHKVVGNGYKSGGIGDDDDDKTDVK 516
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02225 516 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 228 IPR000504 GO:0003723
Tsu07g02225 516 SMART rrm1_1 155 224 IPR000504 GO:0003723
Tsu07g02225 516 Pfam RNA recognition motif 2 328 438 IPR007201 -
Tsu07g02225 516 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 221 IPR000504 GO:0003723
Tsu07g02225 516 SUPERFAMILY RNA-binding domain, RBD 155 409 IPR035979 GO:0003676
Tsu07g02225 516 MobiDBLite consensus disorder prediction 496 516 - -
Tsu07g02225 516 CDD RRM3_EAR1_like 328 429 IPR034458 -
Tsu07g02225 516 Gene3D - 147 235 IPR012677 -
Tsu07g02225 516 PANTHER TERMINAL EAR1-LIKE 1 31 492 - -
Tsu07g02225 516 MobiDBLite consensus disorder prediction 247 282 - -
Tsu07g02225 516 PANTHER RNA BINDING PROTEIN 31 492 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu07g02225 Tsu-Chr7 25065849 25068767 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02225 156 229 Eukaryotic Initiation Factors Gene Family AT2G23350 37.662 9.22e-09 56.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02225 - - aprc:113851312 586.645