Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02183 ATGGAAGAGGAAAATAAGAAGGGAGATGAAGAAGTTAGGTACCGTGGTGTTAGAAGAAGGCCATGGGGAAAATTTGGGGCAGAGATTAGGGATCCTACTAAACCTACCGGAAGACAATGGTTAGGGACATTTGACACGGCCGAGGAAGCTGCAAGAGCTTATGATTGTGCCGCCATTCGTTTGCGGGGTGCTCTAGCCATTCTTAATTTTCCCGATGACTATTATTTTCATCTTTCTTCTTTATCatcgtcgtcatcatcatctacTTGTGCTATTGCAAGCACTTCTTCTACACAATATAAGGAAGTTATTGAGTTTGAGTATTTGGACAATAAGGTGTTGGACGATCTTCTTGCGTCGTCGAAAGAagagaatgaaaagaaaaattattaa 393 0.3766 MEEENKKGDEEVRYRGVRRRPWGKFGAEIRDPTKPTGRQWLGTFDTAEEAARAYDCAAIRLRGALAILNFPDDYYFHLSSLSSSSSSSTCAIASTSSTQYKEVIEFEYLDNKVLDDLLASSKEENEKKNY 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02183 130 ProSiteProfiles AP2/ERF domain profile. 13 71 IPR001471 GO:0003700|GO:0006355
Tsu07g02183 130 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Tsu07g02183 130 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Tsu07g02183 130 SUPERFAMILY DNA-binding domain 13 73 IPR016177 GO:0003677
Tsu07g02183 130 SMART rav1_2 13 77 IPR001471 GO:0003700|GO:0006355
Tsu07g02183 130 PANTHER DNA-BINDING DOMAIN 1 123 IPR044808 GO:0003700|GO:0009873
Tsu07g02183 130 CDD AP2 13 73 IPR001471 GO:0003700|GO:0006355
Tsu07g02183 130 Pfam AP2 domain 13 63 IPR001471 GO:0003700|GO:0006355
Tsu07g02183 130 Gene3D AP2/ERF domain 12 72 IPR036955 GO:0003700|GO:0006355
Tsu07g02183 130 PANTHER ETHYLENE RESPONSE FACTOR 1 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02183 Tsu-Chr7 24137061 24137453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02183 9 120 AP2-EREBP Transcription Factor Family AT3G23230 59.167 4.14e-40 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu07g02183 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02183 - - gmx:100807295 159.073