Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02170 ATGACAAAAATTTCTGAAATTACTGGTGGGAAGATTGATTTTCAATTGAGGGTTCGAGTGATCAATCTATGGGCTACACCCGATCGTAATAATCCAGCTGAAGATGGAGCTATTAACATGATTTTCCTTGACAAGGATTGTGGAAAAATTCATGCAGTTGTTAGAAAAGACCTGATTTCTCAGTTTAAGGATGATATTGAGGAAGGTGCTGCTTATGTCATTGAGAGGTTTATGGTTGCTAAAAATGACTCTTCTTTCAAAACTACTCCCCATAAACATAAGCTTAATTTCATGCGTGGAACCAAGGCCTTCAAAGTTACTGCCAATGAAATACCAACCAACCATTTTAACTTCATGCCTTTTCAAGAGATTCTGGCCTGTACTAAAGAAGATCAGTATCTTGATGTCATTGGACATGTTGTTGAGAAAAATTCTTTGAAGGAAACTGAGAAGAATGGAAACATTCACAAGGTTATGGATGTTACTCTGGAAGACTTggaAGGGAGTAGGATACACTGTACTCTTTGGGCTGATTATGCTGTTAAAATGCAACAATTTATTGATGGTCATGACTCATCTCTTCCTGTGATAATGGTGCTCCAATTGGGCAAACTTAAAAAGTATCTTGGTTCAATGGGGATTTCAAATTCTTTCTATGGGACAAAGTTGTTTTTGAATGCTCAGATCCCTGAGGTGACTACCTACATAGAAAGaATGATTGCTGCCAATGTGGAGCTAACTCAAGTAGTTAGTCAAATGAGCGGACCTGTGATTATGACTGTTGCTGATGATTTGCTCCAGACACCAAGAATGACTATAGAGGATTTAATTGAATCCAATCAGAAATGCTTTGGATCTGTTTTGGCATGGGCATATGAGTTTGACACCGACGCGGGGTGGTTTTATCAGGCCTGCACTAGATGTGCTTCAAGAATTACTTTCATTGTTGGTCAGCTCTACTGTGACAAGTGCAAGATGCCACGAACTGCAATTCCTAGATTCAAAGTCCATCTTCAGGTTATAGATGATACTGGATCAATAACTTTTATCATGTTTGATCGCGTAGTTTCACAAGTTTTGGGTAGGACTGCCCAAGACTTGCTCGACACCATGAACAATGAAGGTGGCTCTCGCAGTTATCCGCCTGAACTTGACGTGTTTGTGGATAAGCGAATGCTTTTTAAGGTTGAAGTGACTGACGCTAATTTATACCGTAATTGGCGTGGCTATACAGTCAAGAAGGTGACAGATGAAGAGGGCATAATTGACCGTTTTGTTTCTCTCCATGGATTAACTGCTGCTGGAAACAATGAGGATGCCAACTATGGTGACTTTGTCTGTAACTTAGGGGATGACACTCCACTGGGATCAGTTGAGGGTGGTGATTCAAACAACAATGAAGAAATTATTGTCCATAGTGCTTTCCACACTCCAACTAGCAAGCTAGCTTCCAAAGAGTCGCTTGATCTTCAAGGCATCGGTGCTTCTGCCACTAAAGAGCCACCAAAGCCCTCTGGGGACATTGCTCTCACCAATTCACCAATGCACACACCAGTGAAGAAACCAGCTGGGAAAAGATCTGCCAACCTTGATGGAGGTGATGATGCAGCCTCAAAGGAAACCAAACTCCCATGTGTGAAAATTGAGGGTGCCAACTGA 1659 0.4123 MTKISEITGGKIDFQLRVRVINLWATPDRNNPAEDGAINMIFLDKDCGKIHAVVRKDLISQFKDDIEEGAAYVIERFMVAKNDSSFKTTPHKHKLNFMRGTKAFKVTANEIPTNHFNFMPFQEILACTKEDQYLDVIGHVVEKNSLKETEKNGNIHKVMDVTLEDLEGSRIHCTLWADYAVKMQQFIDGHDSSLPVIMVLQLGKLKKYLGSMGISNSFYGTKLFLNAQIPEVTTYIERMIAANVELTQVVSQMSGPVIMTVADDLLQTPRMTIEDLIESNQKCFGSVLAWAYEFDTDAGWFYQACTRCASRITFIVGQLYCDKCKMPRTAIPRFKVHLQVIDDTGSITFIMFDRVVSQVLGRTAQDLLDTMNNEGGSRSYPPELDVFVDKRMLFKVEVTDANLYRNWRGYTVKKVTDEEGIIDRFVSLHGLTAAGNNEDANYGDFVCNLGDDTPLGSVEGGDSNNNEEIIVHSAFHTPTSKLASKESLDLQGIGASATKEPPKPSGDIALTNSPMHTPVKKPAGKRSANLDGGDDAASKETKLPCVKIEGAN 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02170 552 Gene3D - 109 248 IPR012340 -
Tsu07g02170 552 PANTHER BNAC07G49340D PROTEIN 45 426 - -
Tsu07g02170 552 MobiDBLite consensus disorder prediction 494 552 - -
Tsu07g02170 552 Pfam Replication factor-A C terminal domain 289 397 IPR013955 -
Tsu07g02170 552 CDD RPA1_DBD_A_like 16 102 - -
Tsu07g02170 552 CDD RPA1_DBD_C 274 418 IPR013955 -
Tsu07g02170 552 Gene3D - 262 421 IPR012340 -
Tsu07g02170 552 CDD RPA1_DBD_B_like 135 240 - -
Tsu07g02170 552 SUPERFAMILY Nucleic acid-binding proteins 268 417 IPR012340 -
Tsu07g02170 552 Pfam Domain of unknown function DUF223 40 128 IPR003871 -
Tsu07g02170 552 PANTHER REPLICATION FACTOR A 1, RFA1 45 426 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu07g02170 552 SUPERFAMILY Nucleic acid-binding proteins 115 238 IPR012340 -
Tsu07g02170 552 SUPERFAMILY Nucleic acid-binding proteins 2 103 IPR012340 -
Tsu07g02170 552 Gene3D - 1 104 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02170 Tsu-Chr7 23958535 23961130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02170 14 399 Core DNA Replication Machinery Family AT5G08020 23.821 1.20e-19 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02170 - - mtr:MTR_1g105785 479.559