Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02148 ATGGCTGAAATTCACTCTCAAACTCCAACAATTAGTCCCACAATAAGAAAACCATGTAACAATCCTTCTACACAACATGGTCTAAATTCTATGGTTCTTGTAGCAGCTATAGTTTGTGCTTTACTTTGTGCTCTTGGCCTCAACACAATGTTACAATGTGTGTTCCAATGCGCGAGCCGTGTCCTTACCGAACCTCTACAATGGATCATTTCTCGAAGGCGCAATTCCGGACtcaagaagaaagaaatggTTGCTTTGCCAACATCAATTTATAATACTCATTTAGCTGAATCAACTCCTCCATCTTTGGATTCTAGTTGTGCTATTTGCTTAGCTGAATTTTGTGATGGTGATAATATGAAGTTGCTACCGAAGTGTAATCACCGTTTTCATGTTGTTTGTATTGATATGTGGTTACTTTCTCATTCATCTTGTCCTAATTGTAGAAAAATGATCAAGTCCAATGATTCTGTACATTGCTTAAGCATTGTCATATCATag 501 0.3613 MAEIHSQTPTISPTIRKPCNNPSTQHGLNSMVLVAAIVCALLCALGLNTMLQCVFQCASRVLTEPLQWIISRRRNSGLKKKEMVALPTSIYNTHLAESTPPSLDSSCAICLAEFCDGDNMKLLPKCNHRFHVVCIDMWLLSHSSCPNCRKMIKSNDSVHCLSIVIS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02148 166 CDD RING-H2_EL5_like 107 149 - -
Tsu07g02148 166 Pfam Ring finger domain 106 149 IPR001841 -
Tsu07g02148 166 SUPERFAMILY RING/U-box 106 155 - -
Tsu07g02148 166 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Tsu07g02148 166 SMART ring_2 107 148 IPR001841 -
Tsu07g02148 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 155 IPR013083 -
Tsu07g02148 166 PANTHER OS06G0666500 PROTEIN 16 160 - -
Tsu07g02148 166 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 16 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02148 Tsu-Chr7 23714117 23714617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02148 11 150 C3H Transcription Factor Family AT3G10910 36.478 1.08e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02148 - - gmx:100803003 224.942