LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu07g02146	ATGGATTCTTCTATAAAAGAATTAGAAAAGCATTTACTTTTGGACTCAATTGATGATGTACGGGTTGTAGGAATTTGTGGGATGGGTGGAATAGTGAAGACAACTCTAGCTACTGTTTTATACAACAAAATCTCTCATCAATTCCATGTGTGCTGCCTCATTGATGATCTAAGCAAAATTTATAGGCAGGATGGTCTAATCGGTGCTCAAAAGCAAATTCTACATCAAACTCTAGGTGAAGAATGCCTTCAAACATGCAATCTTTACAACACATCTAACTTGATACAAAGTAGGCTACACAATGTAAAGTCACTTATAATTCTTGACAATGTTGATCAAGTTGAACAACTTGAGAAATTAGCTGTGAGTCGTGAATGGTTAGGTGCAGGGAGTAAAATCATTATAATTTCTAGAGATGAGCATATCTTGAAAGTATATGGAGTGGATGTTGTTTACAAATTTCCACTCTTGAATGCGACTGATTCTCTTCAATTGTTTAGTCAAAAAGCTTTTAAACTTGATCATGTTATGAATAGTTATGATAAGTTGGCATTTGACATACTATGGTATGATAATGGTTTACCACTAGCAATTAAAGTACTGGGCTCATTTTTGTTTGGTCGAGACATTAATGAATGGAAAAGTGCACTGACTAGATTGAGGGAAAGTCCATACAAAGATATCATGGATGTGTTGCGATTAAGTTTTGAAGGGTTGGagaaattggaaaaagaaataTTTCTCGATGTTGCTTGTTTTTTCAATAGGCGTGATCAAGATTATGTCAAAAACGTTCTAAATTGTTGTGGATTTCATACTGATATTGGATTAAGAGTTTTAGTTGATAAATCACTTCTAAGCACTTCAGAAGTGTATATGGAGCAACCACCTGGGTTTGTTGCTCAGGGGGAGTCATCCAATATGGTTTGTAGTGAAGCTGACCACTCTGTTTTTTACCGTCACTCTGTCCAAGGGTGCATTTATCTGATagtttatgtagatgatattgtcaTAACTGGTAGTGATCAGCAGGGAATACTTCAGTTAAAACAATATCTCTCGAATCAGTTTCAGACTAAAGATCTCGGTAAACTCCGTTATTTTTTGGGCATTGAGGTAGCTCAATCTACAGATGGTATTTTGATTTCACAACGAAAATATGCTatgaatattcttgaagaaacaagTTTATTGAATGCAAAGCCTGTTGATACTCTTATTGATCCAAATGTCAAGCTTCTACCTAATCAGGGGGAGCCTATATCAGATTCAGGAAGATATAGGAGATTGGTTggaaaattaaattatcttACAGTCACTCGACCAGACATTTCATTTGCAGTTAGTGTTTATTTGCTCAATTTGAGAACTTCGGATCTGAGTTACTCGAAAAACCTAAGAAAGATGCCAAATTTTGAAGGGGTCCGAAATCTTGAGCGGCTAAGTTTTGAAGGATGCGTGAAATTGGTGCAGATATATCCATCTATTGAGGTTCTAAGAAAGCTTGTTTTCTTGAATTTGAAAGATTGCAAGAATCTAGTAAGCATACCAaacaacatttgtttcatctctCTTGAATGTCTAAATCTTTCGGGGTGTCCCAAATTGTTTAAGAATCCAAGGCATTTGCATAAAAGTGAATATGCATCACATTCCCAATCGACGACATCTTCCATCTTGAAATGGACCAAGTTTCGTTTCCATTCCTTGTATTCCGGTGCAAACAAAGATTTAGCTAGTTGTTTATTGCGTCCGTTGCTTAGATTATCTTGTTTGCATAAACTTGATATTAGTTTTTGTGGTCTAAGCCAACTCCCTAATGTAATTGGATGTTTAAGATTGCTAGAAGAATTAAACTTAGGGGGAAACAATTTTGTTATATTACCTAGCATGTGCGAGCTTTCCAAGCTTGTATATTTAAACTTGGAGCATTGCAAGTTGTTAGAATCTTTGCCTCGACTTCCTTTTCCTATGACTATCAGTCATGACCTTCGTATTAACAATATTGACATGTCCGATTTTTGGAGGAGAGTAGGATTGATCATTTTCAATTGTCCTAAATTGGGTAAAAGTGAAAGTTGCAGTAGCATGGCATTTTCATGGATGACACAATTGATTCAGGCAAGACAACAATCCTCCGCTGCCTTCTTTCATGAGATCGTTGATATTGTTATTCCTGGAAGTGAAATACCAATTTGGTTCGACAATAAGAGCGAAGGTGATTCAATAACAACGGACCTATCTCCCATTATTCGTGACAATGACAACTATTTCGGTGGCTTTGCTTGTTGTGCAGTATTTTCTGTCGCACCTGTTGATCCAACTACGGCAACAGATGCACACAGACCCGACATAGAGCTATGTATTTCTAATAGTAAAACTCACTTAAGGTGGTATGCAATCATTCCAGTAATTCTTGAAAGACGTCTTATTGAGGTAAAATCAGATCACATTTGCCTAATCTATTTCCCTATAGAATCATTCTTTCATATTCTGAAGTGGATAGATGTAACTCTCAACCATCTTGACGATTTCAAAATGGAAGTTCGCACTAAGAACGGCGAATGTATGAATCTGGATGTTCAGAATTGTGGGATAGTACCATTTACAATGAGCTATGGATAA	2625	0.3531	MDSSIKELEKHLLLDSIDDVRVVGICGMGGIVKTTLATVLYNKISHQFHVCCLIDDLSKIYRQDGLIGAQKQILHQTLGEECLQTCNLYNTSNLIQSRLHNVKSLIILDNVDQVEQLEKLAVSREWLGAGSKIIIISRDEHILKVYGVDVVYKFPLLNATDSLQLFSQKAFKLDHVMNSYDKLAFDILWYDNGLPLAIKVLGSFLFGRDINEWKSALTRLRESPYKDIMDVLRLSFEGLEKLEKEIFLDVACFFNRRDQDYVKNVLNCCGFHTDIGLRVLVDKSLLSTSEVYMEQPPGFVAQGESSNMVCSEADHSVFYRHSVQGCIYLIVYVDDIVITGSDQQGILQLKQYLSNQFQTKDLGKLRYFLGIEVAQSTDGILISQRKYAMNILEETSLLNAKPVDTLIDPNVKLLPNQGEPISDSGRYRRLVGKLNYLTVTRPDISFAVSVYLLNLRTSDLSYSKNLRKMPNFEGVRNLERLSFEGCVKLVQIYPSIEVLRKLVFLNLKDCKNLVSIPNNICFISLECLNLSGCPKLFKNPRHLHKSEYASHSQSTTSSILKWTKFRFHSLYSGANKDLASCLLRPLLRLSCLHKLDISFCGLSQLPNVIGCLRLLEELNLGGNNFVILPSMCELSKLVYLNLEHCKLLESLPRLPFPMTISHDLRINNIDMSDFWRRVGLIIFNCPKLGKSESCSSMAFSWMTQLIQARQQSSAAFFHEIVDIVIPGSEIPIWFDNKSEGDSITTDLSPIIRDNDNYFGGFACCAVFSVAPVDPTTATDAHRPDIELCISNSKTHLRWYAIIPVILERRLIEVKSDHICLIYFPIESFFHILKWIDVTLNHLDDFKMEVRTKNGECMNLDVQNCGIVPFTMSYG	874

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu07g02146	874	Gene3D	-	156	240	IPR042197	-
	Tsu07g02146	874	Gene3D	-	1	150	IPR027417	-
	Tsu07g02146	874	Pfam	Reverse transcriptase (RNA-dependent DNA polymerase)	311	405	IPR013103	-
	Tsu07g02146	874	PANTHER	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	452	837	-	-
	Tsu07g02146	874	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	2	249	IPR027417	-
	Tsu07g02146	874	SUPERFAMILY	L domain-like	433	848	-	-
	Tsu07g02146	874	SUPERFAMILY	DNA/RNA polymerases	327	446	IPR043502	-
	Tsu07g02146	874	PRINTS	Disease resistance protein signature	497	513	-	-
	Tsu07g02146	874	PRINTS	Disease resistance protein signature	191	205	-	-
	Tsu07g02146	874	PRINTS	Disease resistance protein signature	22	37	-	-
	Tsu07g02146	874	PRINTS	Disease resistance protein signature	98	112	-	-
	Tsu07g02146	874	Pfam	C-JID domain	725	865	IPR045344	-
	Tsu07g02146	874	SUPERFAMILY	"Winged helix" DNA-binding domain	227	313	IPR036390	-
	Tsu07g02146	874	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	1	288	IPR044974	GO:0006952
	Tsu07g02146	874	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	452	837	IPR044974	GO:0006952
	Tsu07g02146	874	Gene3D	Ribonuclease Inhibitor	429	561	IPR032675	-
	Tsu07g02146	874	Pfam	NB-ARC domain	4	226	IPR002182	GO:0043531
	Tsu07g02146	874	Gene3D	Ribonuclease Inhibitor	569	716	IPR032675	-
	Tsu07g02146	874	PANTHER	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	1	288	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu07g02146	Tsu-Chr7	23645308	23650057	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu07g02146	3	290	WRKY Transcription Factor Family	AT5G45050	34.483	1.33e-41	163

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu07g02146	-		-	mtr:MTR_4g081270	710.294