Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02116 ATGGCATCTTCTGGTGTTGAAATTGCTTCTTCTGCACCGTTTGGTTGTGTTTTAAGGGATCGTAATCATCGCGATGTATGTAGAGAAAGTAGCAAAGTTAAAGCTACACATGTTGCTTTTCAAAGAAACATTAAGAACTTTGTCATGGATCATTTCAACACGCGCATTTCGAAGTCTGATTCTTCGACAACAAATGAAAACAATATCAATAGCAGCAGCAATAGTAACAACAATGAACGTCAAATGAATAACAACAATCTTGGAAGCATTAGTTTGAAAAGAAACAATCATAACTATGACATTAATAGCAACAATAAGGGTGATAAAGATGACTCAGCCTTGGCTTCAATGATTAGCCCGAAACATTCGCAGCTTCTTGATCGATGGGCTGCGAAACAAGCTCGTGAGATGGTGTCAACATTGCAGAATGAAGCTGAATTGTtgtctattgataacaataacaacaatattCCGGTATCTTCGGAGACATCTAGTATTATCTCGGATGAATGTTCTTCGGAGATATCGAATCTTGGTGCATCTTCCCTTGTTCAGCTATGGGAAAAGAGGCTTAACAAATCAAGTGGATCGAAACCGAGTACTCCAATGGAGAAAACAAGTCCAAATGATGGTTCAAATGCTATTTGCAACAATGAGAATGTGTATGTTGTGGAAGAACAAAGAGGGTTGGGGTTGGAATTAGGAGAGTGTTTTGAAGGACAGTTATCAGGGAACGAAGAATCGTTTTCAATTTCTTCGTTCCCTGATTGGGAATCTGAGAAGACAGGTGATCAAAGTAGGTCTTGTTCAAGAGATCAAAGTAGATGGTGTTCGGCGGAGACTGAGAGTGATAAGAGTGATAGAGTCAGTGTTGCTGAAATCATAAAGAAACTCAATGTAACGAGTCAAATGCAGAGTCCACCTCTGTATTTTACCGATGAAAATGACCATGAAGTGGGTGGTAGTAGCACTACGGCAAGCTCTccttgtagagattttgtgcCGGAATTTCCAGATCAAAGAGCTTTTCCTCAGGTGACTAGTTTACCAAGACTTAGAGGGCGCCAAGCGTACAATGATTTGCTTATACAGTTGGAGAAGGATAGGCATGGTGAGCTTAAGAATCTGGCTGAGCGTGGAACGGTCTCCAAGTTCGCACAAAGAGGTCGCATTCAgGCATTACTTCGACTTAAATTATTACAACGCGGTGTGGCAGCTAATAAACTATTACAGAAATCAACATCGTCTGAAGTTAACAGACAAGTACAACAACCACATGGATCTGCAATTATGCAACTAAGGGAAAAATTTAGCACTGCGGTCGAACAAAAAAGTACAGTCCAGACAGAAGTAGCTAACACACGAAATCCTAGCAAGGAGATAGTGAACAACACCACACAATTGGAAAACTCTTCCATTGCTAATCAAATCAACAAAGAAACAAGCAGCCAGGTTCCTCATGGTACTGCCAGTCACTCCATCGAATCGACACAAAAGTCGGTGTCTCAAACTAGAGAAGAAGATGGGCCAAGTTCAAATGTCATGTCTCAAGAAAAATGTTTTGAAGCTCAGCATGATTACTTCAAGGAAACTGCTGAACCAACTACATCAATGACTGATTCAAATGCTAATGAGAAAGCTGAAGAGGAAAAAAACAAGCAATATGATGAAACCAGTTATGATTGTGCAATAGAAGAGGAAGGAAGCGACCAGAACTATGCTGAAAGCTGTTATGAAGAAGAGATAGTGGAAGAGATCTATTATGAAAATAATCATGACTGGATCAGTGAAATTTCTCGACCGAGGAGCTTTTGGGAAGAGAAAAGGCAAGCTTGGTATAGAGAAATGCTTGACAATGGTTCTGAAAATGAGGATATTCAAGTGCTTCTTCAAAGAAAAACAGTGTCAACTTTCCTTTCTAGTGACTTCCGCGAAAAAATGGATAGATTGATGCAATCTCATAAAGGAACACAAACACATTTAGTGAATACTTACGATGATGACGAAGACAATGAAGGGCTGATGGCATTTTTCCTAGAACGTCTGCATTCTGCAAGAACTACTCAAGAAAATGGAATAGAGAGAATGGTAGACGAAGAAAAGGAAAGGGTAAATGAGGAAGACAAAGACAAAGACAAAGACGAAGAAGAGGAGGATGAGGAGGAGGACGAGGATGAGGACGAGGacgaggatgatgatgatgatgacgaggaggaggaggaggaagagcATGAAGAGGAGCCGGGAGGCAAGAGTTTGGTAAGTAGTTTGTATCATGAAGTTGGAGACTATTCTAATCAATCCTCACCATGGAGTTATAGAGACAATGAAGCTGGTGATGATTTTGATAGAGCTGCTTCTACATCTTCACTACCGTATCAATCTCCGTCTTTCTATCATCATAGTCGGCGAAACTCTCCATCTAACAATCAACATTCAATTGAAATggatatcatatatgatatgagaGGCCATATGGAGCAAATTCATCAAGAGATGACTGAACTAAGGAAATCAATAAAGAGTTGCTTGGATATGCAGATGCATATGCAGTTACAACAATCCAATAACCAAAGGATGCAAACAGttgaaaaagaagaaaagaagtcACATAACAAGGCTGGTAAGAAAGGAAACTGTTGCATTTGCTATAAGATGAAAGTTGACTCAGTACTATACAGGTGCGGACACATGTGTGCATGTCTGAAATGTGCAAATGAGTTACAAAGGAACAGTGGAAAATGTCCAATATGTCAAGCTAAAATAGACGATGTTGTTCGAGTTTTCATTGATGCTTAG 2799 0.3801 MASSGVEIASSAPFGCVLRDRNHRDVCRESSKVKATHVAFQRNIKNFVMDHFNTRISKSDSSTTNENNINSSSNSNNNERQMNNNNLGSISLKRNNHNYDINSNNKGDKDDSALASMISPKHSQLLDRWAAKQAREMVSTLQNEAELLSIDNNNNNIPVSSETSSIISDECSSEISNLGASSLVQLWEKRLNKSSGSKPSTPMEKTSPNDGSNAICNNENVYVVEEQRGLGLELGECFEGQLSGNEESFSISSFPDWESEKTGDQSRSCSRDQSRWCSAETESDKSDRVSVAEIIKKLNVTSQMQSPPLYFTDENDHEVGGSSTTASSPCRDFVPEFPDQRAFPQVTSLPRLRGRQAYNDLLIQLEKDRHGELKNLAERGTVSKFAQRGRIQALLRLKLLQRGVAANKLLQKSTSSEVNRQVQQPHGSAIMQLREKFSTAVEQKSTVQTEVANTRNPSKEIVNNTTQLENSSIANQINKETSSQVPHGTASHSIESTQKSVSQTREEDGPSSNVMSQEKCFEAQHDYFKETAEPTTSMTDSNANEKAEEEKNKQYDETSYDCAIEEEGSDQNYAESCYEEEIVEEIYYENNHDWISEISRPRSFWEEKRQAWYREMLDNGSENEDIQVLLQRKTVSTFLSSDFREKMDRLMQSHKGTQTHLVNTYDDDEDNEGLMAFFLERLHSARTTQENGIERMVDEEKERVNEEDKDKDKDEEEEDEEEDEDEDEDEDDDDDDEEEEEEEHEEEPGGKSLVSSLYHEVGDYSNQSSPWSYRDNEAGDDFDRAASTSSLPYQSPSFYHHSRRNSPSNNQHSIEMDIIYDMRGHMEQIHQEMTELRKSIKSCLDMQMHMQLQQSNNQRMQTVEKEEKKSHNKAGKKGNCCICYKMKVDSVLYRCGHMCACLKCANELQRNSGKCPICQAKIDDVVRVFIDA 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02116 932 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 852 931 IPR013083 -
Tsu07g02116 932 CDD mRING-HC-C3HC5_NEU1 879 918 - -
Tsu07g02116 932 PANTHER BNAC05G24000D PROTEIN 1 718 - -
Tsu07g02116 932 PANTHER BNAC05G24000D PROTEIN 1 718 - -
Tsu07g02116 932 MobiDBLite consensus disorder prediction 192 212 - -
Tsu07g02116 932 MobiDBLite consensus disorder prediction 711 746 - -
Tsu07g02116 932 MobiDBLite consensus disorder prediction 787 813 - -
Tsu07g02116 932 Coils Coil 131 151 - -
Tsu07g02116 932 MobiDBLite consensus disorder prediction 57 111 - -
Tsu07g02116 932 MobiDBLite consensus disorder prediction 57 102 - -
Tsu07g02116 932 PANTHER BNAC05G24000D PROTEIN 717 931 - -
Tsu07g02116 932 MobiDBLite consensus disorder prediction 689 813 - -
Tsu07g02116 932 Pfam Zinc finger, C3HC4 type (RING finger) 877 925 - -
Tsu07g02116 932 PANTHER BNAC05G24000D PROTEIN 717 931 - -
Tsu07g02116 932 MobiDBLite consensus disorder prediction 692 710 - -
Tsu07g02116 932 Coils Coil 697 724 - -
Tsu07g02116 932 MobiDBLite consensus disorder prediction 759 774 - -
Tsu07g02116 932 MobiDBLite consensus disorder prediction 249 273 - -
Tsu07g02116 932 SUPERFAMILY RING/U-box 879 924 - -
Tsu07g02116 932 MobiDBLite consensus disorder prediction 441 515 - -
Tsu07g02116 932 MobiDBLite consensus disorder prediction 532 556 - -
Tsu07g02116 932 ProSiteProfiles Zinc finger RING-type profile. 880 919 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02116 Tsu-Chr7 23253528 23258295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02116 872 928 C3H Transcription Factor Family AT3G06140 35.088 3.83e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02116 - - mtr:MTR_2g437720 1130.16