Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02092 ATGAATCAAACGGTGGTGGTTGACACACTACTATTGCCGTCGCTAGGCAAACCGCCATCATCGGAACCACCAAACACGTTCCCATCAGCGAAGGTACTTTCAGAGCCAAAACCGGCGAACGGCGTTCTTCACAAGAGATCCAACTTCCTTTCGACCACGACCAAAACCGCCGGCGGAGACAAAGGATTCCGGTCAACCTGTGACGGAACTTCTACGACGAGTACCACCACCAATGCCACCGGAACGGCATGGTCCGACGATGGAAAAATCAACCTCAGGCCCACACTTATGATGTACATATGGGTGATTGTAAAAGGATCATCTGTCTTTGTAAGGACATCTGATAGGATCATAACCTTTCATTTTTGGAATCACCATGAAGTGAAGAAATATAGAGCATTTAAAGCATATTATACTGCAGCTCCTACTACGGGAAATAATCTCCTTGAATTCTTGGGCGAAATTGTAATTCAAAAGGAATTAAAAAATGAAGTCCTTGTGTCAATACCAAGTGGAACAATGATAGTTGTAGGACCTCATGATGAATTCAATGTTATTTCATTGTTATTACAATTGTTGAATGAGCACAAAATGAGAGTTGTTGATGTGTGTCGGTGGATGACAAGCGAAGAGATGTCTCTAGATTCAACAAGGAGCACGCAAAACCAGAAGAAGGATTTGATTAAGCAATCTGTTATGGGTATTCTAGTACCTTTGGAGCTTGAATTGGACAACCTTGGAAAGACACTGAAAACATTAGGCTGCAGCTCTGTGAACAATCCAACACCAGTTCAAGCGGAATCGTGGGAACCTCCACCTCTGAATGTAGCCAAAATTAATGTTGATGCTGCCACAAAGAGAGAAAACACAATGCTTTCTGTCGTAGCAGCTGAAGCTACAGGTCTTAGATGGTGCATTCAATGGATTAAGGAGCAGCAACTGAGTAATGTGGTGATTGAAATGGATTCTGAAATTGTGGTACAATGTCTCTTAGGGAAGTCATACTTTGATGCTATTGATTTAATCATTGTTGATTGTTTAGAACTGTTATTTAGTTTGGTTAATGTTAGTGTCAATGCTGTCAAAAGATGTAAAAACATGGCTGCTCATGGCCTTGTTGGAGTTGCTAGAAATGTAGGTTCTAAGTCATGGTGGGGAAATGTCCCTGAGCCAATTTCATCTATTATATGTAATGAATCCTTTTCTATCTATTGA 1215 0.4123 MNQTVVVDTLLLPSLGKPPSSEPPNTFPSAKVLSEPKPANGVLHKRSNFLSTTTKTAGGDKGFRSTCDGTSTTSTTTNATGTAWSDDGKINLRPTLMMYIWVIVKGSSVFVRTSDRIITFHFWNHHEVKKYRAFKAYYTAAPTTGNNLLEFLGEIVIQKELKNEVLVSIPSGTMIVVGPHDEFNVISLLLQLLNEHKMRVVDVCRWMTSEEMSLDSTRSTQNQKKDLIKQSVMGILVPLELELDNLGKTLKTLGCSSVNNPTPVQAESWEPPPLNVAKINVDAATKRENTMLSVVAAEATGLRWCIQWIKEQQLSNVVIEMDSEIVVQCLLGKSYFDAIDLIIVDCLELLFSLVNVSVNAVKRCKNMAAHGLVGVARNVGSKSWWGNVPEPISSIICNESFSIY 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02092 404 CDD RNase_H_like 293 372 IPR044730 -
Tsu07g02092 404 Pfam Reverse transcriptase-like 284 373 IPR002156 GO:0003676|GO:0004523
Tsu07g02092 404 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED 291 398 - -
Tsu07g02092 404 Gene3D - 273 379 IPR036397 GO:0003676
Tsu07g02092 404 SUPERFAMILY Ribonuclease H-like 278 378 IPR012337 -
Tsu07g02092 404 PANTHER - 291 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02092 Tsu-Chr7 22506384 22508751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02092 109 174 CCAAT-HAP5 Transcription Factor Family AT1G08970 39.130 6.35e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02092 - - dcr:108201238 70.0922