Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01983 ATGGAGTCATCGGTTGATTTGTTACCACCAGCTAAACGCACAGCTCCAAATGGAAtttcatctgaggaagaatgcaaaaaacttaaattatCAAGTGATACCTTGCCGCATTCAGCACATGGCAATGTTGTAGATTACAAAAATCCGTATGTAATCTCACATGTTATACATCGTTTAGAGAGTGGAAAATTTGGAAGCGTAACAAAGGATATTGAAGCCCTTATGacccaaaaaattcaaacattggGCCCTTACTTTGCAAAATATCCTATACTTatcaataaatatttgaaagtgGTGATCAATCATGATGAAGAAAATCACAACCCAGAGAATAAAAAAGTGACTGATATGTCACATCAAAATGTCAtagatttggatttggatgagGGGGACATTGAAAGGGATGTTTTGGCaccaaaaagagaaaagaatgtTCCTGCAGCATCATTTCCTATTGTTATCAGTGATTCAGATGAGGAAGATGATAAGGATCAAAAGTCTTTTCTTCCATTTCATGAAGTTATATTGCCGAAATCAGTTCAGTCTCTTGCAATAAAAACAATTGGCTATAATGCTCACAATGCTCACCGTGGAGAAAGTGCAGATCTAAAATTTGAAACAAGTCTGCCTCCTAAAGATAACACAAAGAAAGATAAAGGTGTTTATGTTGGTGTACAAGAGGAAGAAAGTAACGAGGTTGATGCTGAAGATGATGGGCTGGAAGATATTTGGAGGGAGATGTCTCTGGCGATAGAAACTTCTAAAGATGTTTCTGCCGATCAGCCACccgaagaagaggaagaagatgctGACTGTGatcattcttttgttttaaaagaCGACCTTGGTTATGTTTGTCGCGTTTGTGGGGTTATTGACAGAGGAATTGAAACCATATTTGAGTTCCAATACAAGGTTAAAAGGAGCACAAGAACTTATATGTCTGAACCGGGGAGTGCCAAAGAAAAAACAGATATATTTGGAGTTAAGATTGCTAAAGATGATCTCGTGGTAACTGAAATATCAGCACATCCTCGACATGCAAATCAAATGAAACCACACCAAGTCGAAGGATTCAATTTTCTTGTCAGAAACCTGGCGGGGGACCATCCTGGGGGATGTATTCTGGCTCACGCTCCAGGATCTGGAAAGACATTCATGATTATCAGTTTCGTGCAGAGTTTTCTAGGAAAGTATCCCAATGCACGACCTCTGGTGGTGCTTCCTAAGGGAATACTGTCGACTTGGAAAAAAGAGTTTCAGACATGGCAAGTGGAAGATGTACCACTTTATGACCTTTACACGGTCAAGGCTGACAGTAGATCACAACAATTGGAAGTCTTAAAACAGTGGGCGAATAACAAGAGCATCCTTTTTTTAGGATACCAACAGTTTTCTTCCATTATCCGTGATAACTGTAATAGCAATGCATCGATATCTTGCCAAGATATATTGCTTAAGGTTCCCTCAATTCTCATTTTAGATGAGGGACACACTCCCAGGAACGAGAATACTGATATTGTACAGTCACTTGCAAAAGTACAAACACCAAGAAAAGTTGTACTGTCTGGAACCCTATATCAAAACCATGTCAAGGAGGTATTTAACGTGCTTAACCTTGTTCGCCCAAAGTTTTTAAAGATGGAAACATCTAAGCATATTGCCCGACGCATTAAGAGTAGAATCCATATATCTGGTGGGAATGACTTCTGTGAATTGGTTGAAAAGACTTTGCAAACGGACCCAGATTTCAAAAGGAAAGTGGCTGTTATACATGATTTGCGGGAGATGACCAGCAAGGTACTGCACTACTATAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTAGTAGATTTTACTGTGTTGCTCAATCTTACACCTAGACAGAAGCATGAAGTTGAGAAAATAAAGACGAAGTATAAAAAGTTTAAGATGTCTTCCGTAGGTAGTGCAGTATATCTGCACCCAAAATTGACACCGATTGCAGATAAATGGGATGAAAATTCTATATCTGATGTTGATCGTATAATGGATGATCTAATAGCGAACCTCGATGTGAGAGATGGTGTTAAATCAAAATTCTTTCGCAATATGCTGAACCTATGCGAATCAAGTGGGGAGAAGCTTTTGGTGTTCAGTCAATACCTCTTGCCTCTGAAATATTTAGAAAGGTTAGCAAAGAAATGGAAGGGATGGGGTCTTGACAAAGAAATTTTTGTAATTTCAGGAGATTCATCCACTGAACAAAGGGAGCGTGCCATGGAAAACTTCAACAATTCACCTGAtgccaaaatattttttgggtcCATCAAAGCATGTGGTGAGGGTATATCATTGGTTGGAGCATCCCGGATCATCATCTTAGATGTCCATCTTAATCCATCTGTTACTCGTCAAGCTATTGGCCGTGCTTTCCGGCCAGGCCAGAAAAGGAAAGTGTTTGTTTATCGATTGATAGCTGCTGATTCTCCAGAAGAGCAAGATCACAGTACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAATATTGTGGTGACAGAGCATTTGAAGTTGAAACAGTTGATGTGAAGGAATGTGGTGATCTGTTTCTAGAAAGTCCATTGTTAGGGGAAGACGTAAAAGCTCTGTATAAAAGGTAA 2658 0.3698 MESSVDLLPPAKRTAPNGISSEEECKKLKLSSDTLPHSAHGNVVDYKNPYVISHVIHRLESGKFGSVTKDIEALMTQKIQTLGPYFAKYPILINKYLKVVINHDEENHNPENKKVTDMSHQNVIDLDLDEGDIERDVLAPKREKNVPAASFPIVISDSDEEDDKDQKSFLPFHEVILPKSVQSLAIKTIGYNAHNAHRGESADLKFETSLPPKDNTKKDKGVYVGVQEEESNEVDAEDDGLEDIWREMSLAIETSKDVSADQPPEEEEEDADCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMSEPGSAKEKTDIFGVKIAKDDLVVTEISAHPRHANQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFVQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDVPLYDLYTVKADSRSQQLEVLKQWANNKSILFLGYQQFSSIIRDNCNSNASISCQDILLKVPSILILDEGHTPRNENTDIVQSLAKVQTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFLKMETSKHIARRIKSRIHISGGNDFCELVEKTLQTDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVLLNLTPRQKHEVEKIKTKYKKFKMSSVGSAVYLHPKLTPIADKWDENSISDVDRIMDDLIANLDVRDGVKSKFFRNMLNLCESSGEKLLVFSQYLLPLKYLERLAKKWKGWGLDKEIFVISGDSSTEQRERAMENFNNSPDAKIFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKRKVFVYRLIAADSPEEQDHSTCFKKELISKMWFEWNEYCGDRAFEVETVDVKECGDLFLESPLLGEDVKALYKR 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01983 885 CDD SF2_C_SNF 692 820 - -
Tsu07g01983 885 MobiDBLite consensus disorder prediction 1 20 - -
Tsu07g01983 885 Gene3D - 320 582 IPR038718 -
Tsu07g01983 885 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 21 885 IPR044567 GO:0080188
Tsu07g01983 885 Pfam Helicase conserved C-terminal domain 700 808 IPR001650 -
Tsu07g01983 885 SMART helicmild6 724 809 IPR001650 -
Tsu07g01983 885 Pfam SNF2-related domain 372 636 IPR000330 GO:0005524|GO:0140658
Tsu07g01983 885 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 695 863 IPR001650 -
Tsu07g01983 885 PANTHER PROTEIN CHROMATIN REMODELING 35 21 885 - -
Tsu07g01983 885 SMART ultradead3 348 555 IPR014001 -
Tsu07g01983 885 Gene3D - 615 872 IPR027417 -
Tsu07g01983 885 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 366 545 IPR014001 -
Tsu07g01983 885 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 565 IPR027417 -
Tsu07g01983 885 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 847 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01983 Tsu-Chr7 20128142 20135683 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01983 706 837 RAD5 or RAD16-like Gene Family AT5G43530 37.121 4.78e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu07g01983 SNF2_N 6e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01983 K10875 - gmx:100780454 1292.33