Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01956 ATGATATTTAATGCACGACAGCTTGCTTTGAAGCTCATATCAAATGTAACATATGGTTACACTGCGGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGATAGCATTGTTCAATGTGGACAGTGTACACTGGAAAAGGCTATATCATTTGTAAATCTACATGAAAAGTGGAATGCTGAAGTTATTTATGGAGATACTGATAGTGGTTTTAGGTCAAACTTGCTAAGTAGAGTTGCTCTGGTGTTTTTTATGCTTATGAAAGCCCCAATCAAATTGAACCTGTTTTTGATGCCAAAGGTGAAGATTTATTTGCAATGTCAGTGGAAGAGGATTCTTTCAGGTAGAGTTTCCGTTAAGGATTTTATCTTTGCAAAAGAGGTTCGCTTGGGTACCTACAGTGCAAGGATCTCATCACTTCCTTCTGCTGCAATTGTGGCAACTAAGGCAATGAGGGTTAACCGTAGGGCTGAACCACGTTATGCAGAGAGAATACCTTACGTTGTAATCCATGGAGAGCCTGGAGCCCGCCTGGTTGATATGGTTGTGGATCCATTGGAAGTCTTGGCAATTGATTCCCCATTCAGAATAAATGATTTATAA 606 0.4059 MIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGQCTLEKAISFVNLHEKWNAEVIYGDTDSGFRSNLLSRVALVFFMLMKAPIKLNLFLMPKVKIYLQCQWKRILSGRVSVKDFIFAKEVRLGTYSARISSLPSAAIVATKAMRVNRRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRINDL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01956 201 Gene3D Palm domain of DNA polymerase 24 72 IPR023211 -
Tsu07g01956 201 SUPERFAMILY DNA/RNA polymerases 2 191 IPR043502 -
Tsu07g01956 201 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 100 200 IPR030559 GO:0006281|GO:0016035|GO:0019985
Tsu07g01956 201 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 2 73 IPR030559 GO:0006281|GO:0016035|GO:0019985
Tsu07g01956 201 Gene3D - 94 199 IPR042087 -
Tsu07g01956 201 Pfam DNA polymerase family B 1 72 IPR006134 GO:0000166|GO:0003677
Tsu07g01956 201 Pfam DNA polymerase family B 100 187 IPR006134 GO:0000166|GO:0003677
Tsu07g01956 201 Gene3D Helix hairpin bin 2 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01956 Tsu-Chr7 19889371 19891410 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01956 2 70 Core DNA Replication Machinery Family AT5G63960 40.000 8.75e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01956 K02350 - val:VDBG_01980 177.178