Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01952 ATGGATCCTGTAAGGGATGTTGGTAGTGTTGTGGGTACAGTGTTGATTCCCATGCGGTTTGTATGGCCATATGGTGGGAGAAGTGTTTTTCTCAGTGGTTCTTTCACAAGgTGGTCTGAGCTTTTGCCAATGTCTCCGGTCGAAGGTTGCCCAGCAGTATTTCAAGTTATTTATAGATTGCCCCCTGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGACATGATGAGCATCAACCTTATGTACATGGACAATATGGGATTGTCAACACTGTCTTATTGGCAACTGATCCTAACTTCATACCTCTTATAACTTCAGACATTGCTTCCGGAAATAACATGGATGTGGATAATGAGACTTTTCGCCGTGTGGTTCGGGTGCCAGACGATGCATTGAGTGAGGTGCTTCCAAGAATATCAGATACTGATGTACAGATCTCTCGTCAGCGTATTTCTGCATTTCTATCTAAGCACACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTGCATTGGATGTTGATTTACCGGTGAAACAAGCCTTTCATATACTGCATGAGCAGGGAATATACATGGCTCCTCTCTGGGACATGTGCAAGGGGCGATTTGTTGGTGTTCTTAGTGCTTTGGATTTTGTCTTAATTTTAAGGGAGTTGGGGAATCGTGGGTCTAATCTGACAGAAGAGGAGCTTGAAACTCATACCATATCGGCTTGGAAAGAAGGAAAGTCATATCTAAACAGACAGAACAATGGACATGTAACTGCATTTTCTAGACATCTTATCCATGCTGGACCATATGATAATCTTAAAGATATTGCCATGAAGATCTTACAAAAGGAGGTTTCAACAGTTCCTATTATCCATTCatcttctgaagatggttcCTTTCCGCAGTTACTACATCTTGCTTCACTTTCAGGAATACTCAAGTGCATTTGTAGGTATTTTAGGAATTGCTCTAGTTCATTGCCTATACTACAACTTCCAATCTGTGCAATACCTGTGGGCACATGGGTGCCCAAAATCGGGGAATCAAATCGACGGCCTCTAGCAGTATTGAGACCGAGCTCTTCTCTTGCTTCAGCCCTAAATTTATTAGTTCAAGGTGTGAACTTTTTATCTGACATTGAACATTGTGTATCAAAAAGAAATGCGAGAGAGAAAGAATGA 1182 0.4095 MDPVRDVGSVVGTVLIPMRFVWPYGGRSVFLSGSFTRWSELLPMSPVEGCPAVFQVIYRLPPGYHQYKFFVDGEWRHDEHQPYVHGQYGIVNTVLLATDPNFIPLITSDIASGNNMDVDNETFRRVVRVPDDALSEVLPRISDTDVQISRQRISAFLSKHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIYMAPLWDMCKGRFVGVLSALDFVLILRELGNRGSNLTEEELETHTISAWKEGKSYLNRQNNGHVTAFSRHLIHAGPYDNLKDIAMKILQKEVSTVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPKIGESNRRPLAVLRPSSSLASALNLLVQGVNFLSDIEHCVSKRNAREKE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01952 393 Pfam Glycogen recognition site of AMP-activated protein kinase 16 98 IPR032640 -
Tsu07g01952 393 SUPERFAMILY E set domains 16 97 IPR014756 -
Tsu07g01952 393 Gene3D - 141 325 IPR046342 -
Tsu07g01952 393 Gene3D Immunoglobulins 16 108 IPR013783 -
Tsu07g01952 393 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 9 373 - -
Tsu07g01952 393 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 9 373 - -
Tsu07g01952 393 ProSiteProfiles CBS domain profile. 165 227 IPR000644 -
Tsu07g01952 393 CDD E_set_AMPKbeta_like_N 17 95 - -
Tsu07g01952 393 SUPERFAMILY CBS-domain pair 152 322 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01952 Tsu-Chr7 19815310 19825056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01952 6 124 Protein tyrosine phosphatase (PTP) family AT3G01510 29.688 8.18e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01952 - - gmx:100785692 661.759