Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01920 ATGGACGGTCTTAAATCACGTGCACATGTAATTGTTATGGGAGCCACAAATAGGCCTAATAGCATTGACCCTGCACTTAGGAGGTTCGGAAGGTTTGATCGGGAGATTGATATTGGTGTTCCAGATGAAGTCGGGCGTCTTGAAGTTCTTCGAATTCATACAAAGAATATGAAACTAGCTGAAGATGTTgatttagaaaatatttctaAGGGGACACATGGTTATGTTGGTGCTGATCTAGCTGCTTTGTGTACTGAAGCAGCGCTTCAATGTATCAGAGAAAAAATGGATGTGATTAACTTGGAAGATGAGATAATTGATGCTGAAATATTGAACTCCATGGCAGTGACAAATGAGCATTTTGCTACTGCTCTTGGATCAAGCAATCCTTCTGCTCTCCGTGAAACAGTTGTTGAAGTGCCAAATTGCAGCTGGGATGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGACTGTTCAATATCCAGTGGAACATCCTGAAAAGTTTGAGAAGTTTGGAATGTCGCCTTCAAAGGGAGTTCTTTTCTATGGTCCTCCTGGCTGTGGTAAAACACTTTTGGCCAAAGCTATTGCCAATGAATGCCAGGCAAACTTCATCAGTATCAAAGGTCCCGAGCTACTCATGATGTGGTTTGGAGAAAGTGAGGCAAATGTCAGGGAAATTTTCGACAAGGCTCGTGGTTCTGCTCCGTGTGTCCTGTTCTTTGATGAACTTGACTCCATTGCAACTCAGAGAGGTAGTAGTGTAGGAGATGCTGGGGGTGCTGCTGACAGGGTTTTGAACCAGCTGCTAACAGAAATGGATCGGATGTTGGCAAAGAAAACAGTTTTCATCATTGGCGCCACCAATCGACCAGACATTATAGACCCAGCACTTCTGCGTCCAGGTCGTCTAGACCAGTTGATTTATATCCCCCTCCCAGATGAAGATTCCCGCCATCAGATATTTAAAGCTTGCTTGAGAAAATCCCCAATCTCAAAAGATGTTGATATTAGAGCTCTTGCAAAGTACACCCAAGGATTTAGTGGTGCTGATATTACTGAGATTTGCCAGCGTGCATGCAAATATGCCATAAGAGAGAACATTGAAAAGGAcattgaaagaaagagaaagagaagtgAGAACCCTGAGGCCATGGAAGAGGATGTTGACGATGAAGTAGCTGAAATCAAGGCAGCTCATTTTGAGGAATCGATGAAGTACGCAAGAAGGAGCGTAAGTGATGCTGACATTCGCAAGTACCAAGCATTTTCTCAAACACTGCAGCAGTCCAGAGGGTTTGGAACTGAGTTTAGGTTTGCAGATTCCGGAACCAGTGGTGCTGCCACTATAGGTGCATCCGACCCATTTACATCTGCTGGTGGAGCTAATGATGACGATCTATATAGTTAG 1422 0.4276 MDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLENISKGTHGYVGADLAALCTEAALQCIREKMDVINLEDEIIDAEILNSMAVTNEHFATALGSSNPSALRETVVEVPNCSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLMMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDRMLAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPISKDVDIRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERKRKRSENPEAMEEDVDDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFSQTLQQSRGFGTEFRFADSGTSGAATIGASDPFTSAGGANDDDLYS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01920 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 131 IPR027417 -
Tsu07g01920 473 CDD AAA 1 39 - -
Tsu07g01920 473 Pfam AAA+ lid domain 338 379 IPR041569 -
Tsu07g01920 473 Pfam AAA+ lid domain 62 103 IPR041569 -
Tsu07g01920 473 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 1 449 - -
Tsu07g01920 473 Gene3D - 320 428 - -
Tsu07g01920 473 PANTHER AAA-FAMILY ATPASE 1 449 - -
Tsu07g01920 473 Gene3D - 1 41 IPR027417 -
Tsu07g01920 473 Gene3D - 42 132 - -
Tsu07g01920 473 ProSitePatterns AAA-protein family signature. 10 28 IPR003960 GO:0005524|GO:0016887
Tsu07g01920 473 Pfam ATPase family associated with various cellular activities (AAA) 1 39 IPR003959 GO:0005524|GO:0016887
Tsu07g01920 473 Pfam ATPase family associated with various cellular activities (AAA) 183 316 IPR003959 GO:0005524|GO:0016887
Tsu07g01920 473 SMART AAA_5 179 318 IPR003593 -
Tsu07g01920 473 Gene3D - 133 316 IPR027417 -
Tsu07g01920 473 ProSitePatterns AAA-protein family signature. 286 304 IPR003960 GO:0005524|GO:0016887
Tsu07g01920 473 MobiDBLite consensus disorder prediction 450 473 - -
Tsu07g01920 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 430 IPR027417 -
Tsu07g01920 473 CDD AAA 149 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01920 Tsu-Chr7 19506379 19507800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01920 1 98 Calmodulin-binding Proteins AT3G56690 41.837 5.83e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01920 K13525 - gmx:100814141 861.677