Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01918 ATGTTCCAAGCAATGTCGAAATTGTTTCTATGCCCACCGAATGTTGTTTTAGGGTTAATCACAACAAACCCTAAATTCGATCCTCTTTCTCAAAAACACTCTTCGTTCCCAATTTCACTCAGATTCAGATACTGCACCATCACAGCAACAACAGCATCAGAATCAAATTCAGAGTCACAACCATTTGCTGTATCATACCTAATCAACAATTTTGGTTTCTCAACTGAATCAGCTCTCAAAGCTTTCAACAATAAACAGGTTCGTTTCAATACCGTAGAAAAGCCTAATTCAGTTATCAAATTCTTTAAAAACCATGGTTTTTCAGACTCCAACATACGCACCATCATCAGAAAAGAACCTTGGTTACTTTCATCGGAACCCCACAATGCAATTTTgtcaaagtttcaattttttctatccAAAGGTCTTTCTGCCTCTGATATTGTTTCATTCTTAACTGCAAACCCTGCAATTTTACAAAGTAGCTTGAAGAAACGAATAATCCCTCTTTTTGAATTATTAAGTAGGTTCTTGAAAACCAACAAGGATGTCATTGTTTCCTTAATTATACATTCAGATTTATTAGATAAGTATCCATATGACCTTATTGTGGCTAATATCATTTTGATGACTGATTTTGGAGTTTGTGATTCTGCCATTGCTACATTGTGTCAAAATAGGCCATCtatatttggttcaaatgaTATGATTAAGTCATTGGAGGAAGTTAAGGGTTTAGGGTTTAATCCTTCAAAGACTAATTTTGGGATTGCTTTGATGGCCAAGAAAGGTATGAGTAAAAAACTATGGGATGAGAAAGTTGATACCTTTAAAAAATGGGGATGGTCTGATGAAGCTGTTTTTCAAGCATTTAGGTCATATCCTAATTTGATGTTGGCTTCAATTGATAAGGTTAATTTGGTGATGAGTTTTTGGGTCAACCAATTGCGTTGGAATTCCTTGGCACTTACTAAATGTCCACATATGTTTGGTTTTAGTTTACATAAAAGGATCATTCCAAGGGCCTCAGTTTTGCAATTTCTTTTGATGAAAGGTTTGCGAGAAAAGAATGCAAGCTTAGTTACACCATTTAGGTATAATGAGAAATTGTTCTTGAACAAGTTTGTTTTCAGCTTTAAGGAGGAGTCTGATTATCTATTAAAGCTATATGAGGAAAAAATGAAACTTGCATTCTCAGAGGAAAACAATGGCATGCCACTGACTAAATAG 1230 0.339 MFQAMSKLFLCPPNVVLGLITTNPKFDPLSQKHSSFPISLRFRYCTITATTASESNSESQPFAVSYLINNFGFSTESALKAFNNKQVRFNTVEKPNSVIKFFKNHGFSDSNIRTIIRKEPWLLSSEPHNAILSKFQFFLSKGLSASDIVSFLTANPAILQSSLKKRIIPLFELLSRFLKTNKDVIVSLIIHSDLLDKYPYDLIVANIILMTDFGVCDSAIATLCQNRPSIFGSNDMIKSLEEVKGLGFNPSKTNFGIALMAKKGMSKKLWDEKVDTFKKWGWSDEAVFQAFRSYPNLMLASIDKVNLVMSFWVNQLRWNSLALTKCPHMFGFSLHKRIIPRASVLQFLLMKGLREKNASLVTPFRYNEKLFLNKFVFSFKEESDYLLKLYEEKMKLAFSEENNGMPLTK 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01918 409 Pfam mTERF 99 231 IPR003690 GO:0003690|GO:0006355
Tsu07g01918 409 Pfam mTERF 265 371 IPR003690 GO:0003690|GO:0006355
Tsu07g01918 409 PANTHER CGI-12 PROTEIN-RELATED 25 399 IPR003690 GO:0003690|GO:0006355
Tsu07g01918 409 Gene3D Transcription termination factor 3, mitochondrial 194 388 IPR038538 -
Tsu07g01918 409 Gene3D Transcription termination factor 3, mitochondrial 64 193 IPR038538 -
Tsu07g01918 409 SMART mt_12 149 180 IPR003690 GO:0003690|GO:0006355
Tsu07g01918 409 SMART mt_12 221 249 IPR003690 GO:0003690|GO:0006355
Tsu07g01918 409 SMART mt_12 113 144 IPR003690 GO:0003690|GO:0006355
Tsu07g01918 409 SMART mt_12 320 354 IPR003690 GO:0003690|GO:0006355
Tsu07g01918 409 SMART mt_12 288 319 IPR003690 GO:0003690|GO:0006355
Tsu07g01918 409 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 25 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01918 Tsu-Chr7 19457136 19458756 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu07g01918 mTERF 6.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01918 K15032 - gmx:102663414 328.946