Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01917 ATGTGTCTTGAGTCGATTAATTACTCGGTTATGATGAATGGAGAAGCTGTAGGTCCAATCAAACCGGGGAGAGGCCTTAGGCAAGGCGACCCGTTGTCCCCATATTTATTTATCCTGTGTGCAGAGGGGTTGACaacacttattaaaaaatatgagaatAGAGGAGATATTCACGGTGTCAGAGTATGCAGAGGGGCTCCTAGCCTCTCACACTTGTTGTTTGCTGACGATTGCTTCCTTTTTTTCAGGGCAGATATCAGGGAGGCTCAATACATGAAGCAAATCCTTAATGATTATGAGAAGGCATCAGGTCAAGCGATCAATTATGCCAAGTCAGAAGTGTACTTCAGCAGGAACACCCCAGCCAACATAAAAAGTCAAATTACGGCTACTCTAGGTGTTTCAGAAACTATGGGGACCGGAAGATATCTTGGGATGCCATCAATGATTGGTCGCAATAAGAAAGCGATTTTCGGCTATCTGAAAGACAGAATGTGGAAGAGAATACAAGGGTGGTCTGGTAAGCATCTCTCAAAAGCGGGAAGAGAAGTTTTAGTGAAGCAAAGGGATCAATTGGTTACGGTGGAAAAACTTACTATGCGTAAGGAACACGGAGGAATGGGATTCCGACATTTGTATGGATTCAATTTGGCAATGCTAGGGAAGCAAGGGTGGCACTTAGTTACCAACCAAGATACTATTTTGGCAAAGGTTTTCAAAGCTAAATACTATCCGAATGAGGGATTTttaaatgcaaaattgggtCATAATCCAAGCTATGTGTGGCGTAGTATCCATGCTTCTCAGGTAATAGTCAAAAGAGGATTACGATGGCGGATAGGAAATGGAGACAAGATAAATGTATGGAGCCAACCTTGGTTAAGAAAAGCCAACCATGCGTATGTTACTACAAATACAGTGGCTGgacatgaacaattgaaagtaGCAGGTCTTATAAACCACAATGAAGGAAAGTGGGATGTTAATCTAGTGCAGCAACTATTCAATCAAAATGATACAGCATCAATTTTCCAAATACCACTTCAATTAACAAATGAAGAGGACGTGCCGATTTGGAGATTTAGCAGAAACGGTAAATACTCTGTGCGTTCAGCGTACTATCAATTGATGGAGGTGATCATTGATAATAATCATTTAAGGGAGGAAGGGAATTGGACAAAACTATGGAAGCTCAATGTTCCAAATAAAGTGAAAATATTTCTGTGGAGGTCCCTTAGAGGTTGTTTACCGGTGAAAGAAAGGTTGATCCCGAAAGGAGTGCAATGTGACTCGAAATGTATATGTTGTGATGTGAGTGGAGAGAACGAATGGCACTGCTTCTTCGGATGTAAGGCTGCCCAAGAGGTGTGGATAGAATCCGAATTTTGGGAAAGTTTGCACCAGAAAATAGAGGCTGCTGTTGGGTTCAAACAACTGGTTTTCTCTCTCATTGAATCAATGGACAGCAAAAGCATGGCGCAAGTAGCTATGTTACTATGGACGTTGTGGTGGCGTCGAAATCAATTATGCTGGAATGACAAACTGCCATCAGTATTTGAAGTGAGACGGCGAGCACGAGATGCACTGGAAGATTGGTTGAAAGTGAGAGGTAAGGGTACACGACAACAACCAATAGTCACACATGAAGCTGAACGCAAATGGTGCAAACCACAACCAGGTACTCTTAAATGTAATATTGATGCTGCCTGCTTTGTAAATGCGAACCAGTTTTGTATCGGTGCGTGCATAAGAGATGCAGATGGAGATTTATTAGCTGAGTATCCATATGACCGTATTGTGGCTAATATCAATTTGATGACTGATTTTGGAGTTTGTGATTCTGCCATTGCTACATTGTTTCATAATAGGACATCtatatttggttcaaatgaTTTGATTAAGTCATTGGAGGAAGTTAAGGGTTTAGGGTTTAATCCTTCAAAGACTAATTTTGGGATTGCTTTGATGGCCAAGAAAGGTATGGGTAAAAAACTATGGGATGAGAAAGTTGATACCTTTAAGAAATGGGGATGGTCTGCTGAAGCTGTTTTTCAAGCATTTAGGTCATATCCTAATTTGATGTGCTCTTCAATTGATAAGGTTAATTTGGTGATGAGTTTTTGGGTCAATCAATTGGGTTGGAATTCCTTGGCACTTACTAAACGTCCACACATGTTTGGTTTTAGTTTACATAAAAGGATCATTCCAAGGGCCTCAGTTTTGCAATTTCTTTTGATGAAAGGTTTGCGAGAAAAGAATGCAAGTTTAGTTCACCCATTTAATTGTTCTGAAAAGTTGTTCTTGAGCAAGTTTGTTTTTAGCTTTAAGGCGGAGTCTGATTATCTATTAAAGCTATATGAGGAAAAAATGAAACTTGCATACTCAGGAAAACAATGGCATGCCACTGACTAA 2412 0.3943 MCLESINYSVMMNGEAVGPIKPGRGLRQGDPLSPYLFILCAEGLTTLIKKYENRGDIHGVRVCRGAPSLSHLLFADDCFLFFRADIREAQYMKQILNDYEKASGQAINYAKSEVYFSRNTPANIKSQITATLGVSETMGTGRYLGMPSMIGRNKKAIFGYLKDRMWKRIQGWSGKHLSKAGREVLVKQRDQLVTVEKLTMRKEHGGMGFRHLYGFNLAMLGKQGWHLVTNQDTILAKVFKAKYYPNEGFLNAKLGHNPSYVWRSIHASQVIVKRGLRWRIGNGDKINVWSQPWLRKANHAYVTTNTVAGHEQLKVAGLINHNEGKWDVNLVQQLFNQNDTASIFQIPLQLTNEEDVPIWRFSRNGKYSVRSAYYQLMEVIIDNNHLREEGNWTKLWKLNVPNKVKIFLWRSLRGCLPVKERLIPKGVQCDSKCICCDVSGENEWHCFFGCKAAQEVWIESEFWESLHQKIEAAVGFKQLVFSLIESMDSKSMAQVAMLLWTLWWRRNQLCWNDKLPSVFEVRRRARDALEDWLKVRGKGTRQQPIVTHEAERKWCKPQPGTLKCNIDAACFVNANQFCIGACIRDADGDLLAEYPYDRIVANINLMTDFGVCDSAIATLFHNRTSIFGSNDLIKSLEEVKGLGFNPSKTNFGIALMAKKGMGKKLWDEKVDTFKKWGWSAEAVFQAFRSYPNLMCSSIDKVNLVMSFWVNQLGWNSLALTKRPHMFGFSLHKRIIPRASVLQFLLMKGLREKNASLVHPFNCSEKLFLSKFVFSFKAESDYLLKLYEEKMKLAYSGKQWHATD 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01917 803 Gene3D Transcription termination factor 3, mitochondrial 582 780 IPR038538 -
Tsu07g01917 803 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 2 134 IPR000477 -
Tsu07g01917 803 Pfam mTERF 599 767 IPR003690 GO:0003690|GO:0006355
Tsu07g01917 803 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 591 795 - -
Tsu07g01917 803 PANTHER CGI-12 PROTEIN-RELATED 591 795 IPR003690 GO:0003690|GO:0006355
Tsu07g01917 803 Pfam zinc-binding in reverse transcriptase 367 457 IPR026960 -
Tsu07g01917 803 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 1 136 IPR000477 -
Tsu07g01917 803 SMART mt_12 716 750 IPR003690 GO:0003690|GO:0006355
Tsu07g01917 803 SMART mt_12 684 715 IPR003690 GO:0003690|GO:0006355
Tsu07g01917 803 SMART mt_12 617 645 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01917 Tsu-Chr7 19408575 19413423 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu07g01917 mTERF 2.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01917 - - vri:117922369 507.679