Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01905 AtgttcaaattcaattcattgCGCCACAAAACCCTAATCAATCATCTCAAGGGATTAACATTACAATCTCAAAACCCTAACCCTCTTTTCCACCGTTACCCATCACTATTTTCTACACATTTCTGCACCAACACTTCCGATTCAACCCCATTTCCTGTCTCCTACCTCATCAACAAATTTGACTTTTCTCCACAATTTGCTTCCAAACTCTGTTACAGCTACCGTCTTAGATTTAAGACTGCCAAAAAACCTGACTCTGTTCTCGCATTCTTTAGAAACTATGGTTTCTCAGATTCCCAACTTCGCCATATGATTCCCAAGTTACCAGACTTACTTTCCTGCAACCCCTCCAAAAGGGTATTgccaaagtttcaattttttctctccaaagGTGCTTCTACCTCTGACATTGTTAACCTTGTCAGTAAGAACCCTAGAGTTTTGTCTCCAAGCCTGAAGAATCATATAGTCCCAACCTATGAAGTGGTTTATAGAATCTTGAAATCTCATGATGAGACTATTACTCGTGTGATTCTTGATCCAGTTTACCATGGAAACAATCATGTGCATGCTAACATCAGATTGCTTATTGAGAATGGAGTTTCCGACTCAAACATTGCAAGATTGCTTCGGAACTGGGGTCAGGTATTCCGGACACATGACATGCTGAAGTTGGTGGAGGAATTAAAGGATTTAGGGTTTAGTCCTACACAAACAACTTTCGCAATAGCATTGCATGCTAAAACATATGTAATAAAAAACCTGTGGAAAGAGAAAGTTGATGCCTTTAAGAAATGgggttggtctgatgaagatgttgTGATTGCATTTAAAAAGCAGCCTTACTGTATGTTAGTATCcattgataaaattaatttattgatgaGTTTTTGGGTCGATCAGTTGGGTTGGGATCCTCTTGTCCTCGCCAAAGGACCGTCGCTTTTTTTGTTAAGTTTGGAAAAAAGGATCATTCCTAGGGCCGAAGTAGTGCAATTTCTGCTGAAGAAAGGTTTGCGAGAAAAGAATGCAAGCTTAACTTGTCCATTTGTAGTGCCTGAGAAGGTGTTTCTTGATATGTTTATAAATCGTTTTAAGGAGTCTTCTTATCTATTTAAGTTGTACCAGGAAAAACTCAATCTTCCGTGCACCAGAGATAAAACTTGCATGTCATGGTCCAAGTTGTTTTAG 1191 0.3636 MFKFNSLRHKTLINHLKGLTLQSQNPNPLFHRYPSLFSTHFCTNTSDSTPFPVSYLINKFDFSPQFASKLCYSYRLRFKTAKKPDSVLAFFRNYGFSDSQLRHMIPKLPDLLSCNPSKRVLPKFQFFLSKGASTSDIVNLVSKNPRVLSPSLKNHIVPTYEVVYRILKSHDETITRVILDPVYHGNNHVHANIRLLIENGVSDSNIARLLRNWGQVFRTHDMLKLVEELKDLGFSPTQTTFAIALHAKTYVIKNLWKEKVDAFKKWGWSDEDVVIAFKKQPYCMLVSIDKINLLMSFWVDQLGWDPLVLAKGPSLFLLSLEKRIIPRAEVVQFLLKKGLREKNASLTCPFVVPEKVFLDMFINRFKESSYLFKLYQEKLNLPCTRDKTCMSWSKLF 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01905 396 Gene3D Transcription termination factor 3, mitochondrial 183 373 IPR038538 -
Tsu07g01905 396 Gene3D Transcription termination factor 3, mitochondrial 59 181 IPR038538 -
Tsu07g01905 396 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 21 384 - -
Tsu07g01905 396 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Tsu07g01905 396 SMART mt_12 138 169 IPR003690 GO:0003690|GO:0006355
Tsu07g01905 396 SMART mt_12 207 235 IPR003690 GO:0003690|GO:0006355
Tsu07g01905 396 SMART mt_12 102 133 IPR003690 GO:0003690|GO:0006355
Tsu07g01905 396 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Tsu07g01905 396 Pfam mTERF 88 235 IPR003690 GO:0003690|GO:0006355
Tsu07g01905 396 Pfam mTERF 256 357 IPR003690 GO:0003690|GO:0006355
Tsu07g01905 396 PANTHER CGI-12 PROTEIN-RELATED 21 384 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01905 Tsu-Chr7 19243471 19244661 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu07g01905 mTERF 3.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01905 K15032 - gmx:102663414 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01905 07 19243471 19244661 Tsu07g01905 07 19243471 19244661 ECH