Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01900 ATGTTCAGATTCAATTCATGGCGccacaaaaccctaatttatcaTCTCAAGGGATTAACATTACAATCCCCAAACCCTAACCCTCTTTTCCACCATTACCCATCATCTCTATTTTCTACACATTTCTGCACCAACACTTCTGATTCAACCCCATTTCCTGTCTCCTACCTCATCAACAAATTTGACTTCTCACCACAATTTGCTTCCAAACTCTGCTCAACTTACAAGGTTTGTTTCAAGACATCCCAAAACCCTGATTTAGTTCTCAACTTCTTTAGAAACAATGGTTTCTCAGAAACCCAATTATGTTATATCATTTCCAAGGCACCAAGGTTACTTTCCTGTGACCCCTGCAAAAGGGTGTTgccaaagtttcaattttttctctccaaagGTGCTTCTAACTCTGACATTGTTAACCTTGTCAGTAAAAATCCCAAAATCTTGTCTCCAAGCTTGAAGAATCATATAATCCCAACCTATGAATTGCTTTATGGATTCTTGCAATCAGATAATGACACTATTGCTTCTGTAACTCAAAATCCAGTTTTACTTTGTGACCATCGTGCGTCTAATAACATCACAATGCTGGTTGAGAATGGAGTCGCCAACTCAAACATTGCAAGATTACTTCGGATCCGTAGTCGGGTATTCCATTCACGTGAGTTGCTGAAGTTTGTGGGTGAAGTAAAGGATTTGGGGTTTAATCCTtcgaaaataattttttccataGCATTGACTGCTAAAGCATCTGTAACCAAAACCAGGTGGAAAGCGAAAGTTGATGCCTTGAAGAAGTGgggttggtctgatgaagatgcaGTTGAAGCATTTAGAAAGAAACCTTATTGTATGTTAACAtccattgaaaaaataaatttagtgaTGAGCTTTTGGGTCAATCAGATGGGTTGGGATGCTATGGCCATTGCCAAAGCACCATATGTTTTGTCGCTAAGTTTGGAAAAAAGGATTATTCCAAGGGCTGCTGTTGTGCAATTTCTTCTCAATAAAGGTTTGAAAGATAAGATACCAAGCCTAACTTATCCAATTGTAATGTCTGAGGAGTTGTTTCTTGATATGCTTAACAAACGTTGTAAGTATGAGTCTTCTTATCTTTTAAAGTTGTATGAGGAAAAAATCAATCTTGCGAATACCAAGGACAAGATACAATGA 1176 0.3469 MFRFNSWRHKTLIYHLKGLTLQSPNPNPLFHHYPSSLFSTHFCTNTSDSTPFPVSYLINKFDFSPQFASKLCSTYKVCFKTSQNPDLVLNFFRNNGFSETQLCYIISKAPRLLSCDPCKRVLPKFQFFLSKGASNSDIVNLVSKNPKILSPSLKNHIIPTYELLYGFLQSDNDTIASVTQNPVLLCDHRASNNITMLVENGVANSNIARLLRIRSRVFHSRELLKFVGEVKDLGFNPSKIIFSIALTAKASVTKTRWKAKVDALKKWGWSDEDAVEAFRKKPYCMLTSIEKINLVMSFWVNQMGWDAMAIAKAPYVLSLSLEKRIIPRAAVVQFLLNKGLKDKIPSLTYPIVMSEELFLDMLNKRCKYESSYLLKLYEEKINLANTKDKIQ 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01900 391 Pfam mTERF 89 218 IPR003690 GO:0003690|GO:0006355
Tsu07g01900 391 Pfam mTERF 254 358 IPR003690 GO:0003690|GO:0006355
Tsu07g01900 391 SMART mt_12 139 170 IPR003690 GO:0003690|GO:0006355
Tsu07g01900 391 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Tsu07g01900 391 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Tsu07g01900 391 SMART mt_12 307 341 IPR003690 GO:0003690|GO:0006355
Tsu07g01900 391 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 20 385 - -
Tsu07g01900 391 PANTHER CGI-12 PROTEIN-RELATED 20 385 IPR003690 GO:0003690|GO:0006355
Tsu07g01900 391 Gene3D Transcription termination factor 3, mitochondrial 152 370 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01900 Tsu-Chr7 19149414 19150589 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu07g01900 mTERF 3.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01900 K15032 - gmx:102663414 364.385