Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01899 AtgttcaaattcaattcatggCGCCACAAAACCCTAATCTATCTCAAACCTTTACAATCCCCAAATTCATCACAATTTTCTCTACATTTCTGCACCAACGCTTCCGTTTCAATCCCATTTCCTGTCTCCTACCTCATCAACAATTTTGGGTTTTCCCCACAACCTGCTTCCAAACTCTGTTCCAGCTACCGTCTTACATTTAAGACTGCCAAAAAACCTGACTCTGTTCTCACATTCTTTAGAAACCACGGCTTCTCCGATTCCCAACTCCGCGATATGATTCCCAAGGTACCTGAACTACTTTCCTGCAACCCCTCCACAAGGGTGTTgccaaagtttcaatttttactCTCCAAAGGTGCTTCTAACTCTGACATTGTTAACCTTGTTAGTAAGAACCCTATGGTCTTGTCTCCAAGTTTGGAGAATCATATAATCCCAACCTATGAATTGCTTTATAGATGCTTGAAATCTCATAAGGAAACTATTGATTGTGTAATTGGCAATCCAACTTTATTTTGTGACCGTCATGTGAAACATAACATCACAATGTTGATTGAGAATGGAGTGGCTGATACAAACATTGCAAGATTGCTTCGGGACCGTAGTCGGATATTCAAGTCTAGTGATCTGCTGAAGTTGGTGGATGAATTGAAGGATTTGGGGTTTAATCCTTCGAAAACAAGTTTTGGTGTGGCATTTAAAGCTAAAACAACGGTCACGGAAACCTTGTGGAAAGAAAAGGTTGACGCCTTTAAGAAGTGgggttggtctgatgaagatgctCTTGAAGCATTTAAAAAGAAACCTTATTGTATGTTAGTATCCGTTGACAAGATAAATTTAGTGATGAGTTTTTGGGTCAACCAGTGTGGTTGGGATGCTATGGATATTGCCAGAACACCATATATTTTGACGTTAAGTTTGGAAAAAAGGATCATTCCGAGGGCTGCAGTTGTGCAATTTCTTCTCAATAAAGGTTTGATTGATAAGAATGCAAGCTTAACGTATCCATTTGTAGTGCCCGAGAAGTTGTTTCTTGTAAGTGGAGCTTATCATATATTGACCTGCATGTACTCTCGTGAGACATCTCCTCATCACGATCTTATTTGGAATAAGCTTGTGATGTCAACAGTTTCCACTTTTGCTTGGAGGTTCATCAATGACAGACTTCCTACTAAGGTTAACCATTTTACGCGTGAATGTTTTCGTAATGATTCCCTGTTTTGCTCAGTTGGTAGTGACATTATTGAGGATATCCATCATCTTTTCCCGAATTGCCCCGTTTTTTGGGCGGTTTGGAGATGCATCTTTGCCTAG 1320 0.3826 MFKFNSWRHKTLIYLKPLQSPNSSQFSLHFCTNASVSIPFPVSYLINNFGFSPQPASKLCSSYRLTFKTAKKPDSVLTFFRNHGFSDSQLRDMIPKVPELLSCNPSTRVLPKFQFLLSKGASNSDIVNLVSKNPMVLSPSLENHIIPTYELLYRCLKSHKETIDCVIGNPTLFCDRHVKHNITMLIENGVADTNIARLLRDRSRIFKSSDLLKLVDELKDLGFNPSKTSFGVAFKAKTTVTETLWKEKVDAFKKWGWSDEDALEAFKKKPYCMLVSVDKINLVMSFWVNQCGWDAMDIARTPYILTLSLEKRIIPRAAVVQFLLNKGLIDKNASLTYPFVVPEKLFLVSGAYHILTCMYSRETSPHHDLIWNKLVMSTVSTFAWRFINDRLPTKVNHFTRECFRNDSLFCSVGSDIIEDIHHLFPNCPVFWAVWRCIFA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01899 439 Pfam zinc-binding in reverse transcriptase 347 434 IPR026960 -
Tsu07g01899 439 SMART mt_12 91 122 IPR003690 GO:0003690|GO:0006355
Tsu07g01899 439 SMART mt_12 295 329 IPR003690 GO:0003690|GO:0006355
Tsu07g01899 439 SMART mt_12 263 294 IPR003690 GO:0003690|GO:0006355
Tsu07g01899 439 SMART mt_12 127 158 IPR003690 GO:0003690|GO:0006355
Tsu07g01899 439 SMART mt_12 196 224 IPR003690 GO:0003690|GO:0006355
Tsu07g01899 439 PANTHER CGI-12 PROTEIN-RELATED 24 347 IPR003690 GO:0003690|GO:0006355
Tsu07g01899 439 Pfam mTERF 77 223 IPR003690 GO:0003690|GO:0006355
Tsu07g01899 439 Pfam mTERF 245 346 IPR003690 GO:0003690|GO:0006355
Tsu07g01899 439 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 24 347 - -
Tsu07g01899 439 Gene3D Transcription termination factor 3, mitochondrial 140 352 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01899 Tsu-Chr7 19144912 19148513 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu07g01899 mTERF 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01899 K15032 - gmx:102663414 370.548