Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01893 ATGTTGAGTTCACATCGCCATAGAACTTTTCTCTACCTCAACAAAGCCTTAAACCCTAACCCTATTTTCCACAACTACCCATCACTATTTTCTCCACATTTCTGCACCAACACTTCAGATTCAACCTCTTTTGCAGTTTCCTACCTCATCAACAATTTTGGGTTTACCCCACAATCTGCTTCCAAACTTTGCTCCACTTACAATGTTCGTTTCAAGACAACCCAAAAACCTGATTATGTTCTCAAATTCTTTAGAAATCAAGGTTTAGTTGATTCCCAAATACGTAATATGATTTCCAAAGCACCATGGTTACTTACCTGTAACCCCTCTAAAAGAGTGTTgccaaagtttcaatttttactCTCCAAAGGTGCTTCTAACTCTGACATTGTTAACCTTGTCAGTAAGAACCCTCTGGTCTTGTCTCCAAGCTTGGAGAATCATATAGTCCCAACCTATGAATTGCTTTATAGATTCTTGAAATCTGACAAGAACGTTATTGCTTCTACATTTGGCAATCCAACTTTATTTACTCACCATATGGTGTCACGTAACATTAAATTGTTGATTGAGAATGGAGTGATAGACTCGAACATTTCAAACTTGATTCGGATACAGAGCACTGTACTATGCAGAAATGACAATGAATTTTTGAATGTGGTGAAGGAATTGAAGGATTTGGGGTTTAATCCtacaaaatcacttttttatgtAGCACTGCTTGCCAAAATAACGGTAACAAAAACTAGGTGGGAAGAGAAAGTTGATACCTTTAAGAAATGgggttggtctgatgaagatgttTTAGAAGCGTTTAAAAAGCAGCCTCAATGTATGCTAACATCCattgataaaattaattcaGTCATGAGCTTTTGGGTCAATCAGTTAGGTTGGGATGCTAGGGCCATTGTGAAACTACCAAGGGTTTTTGGGTCCAGTCTAGAGAGAAGGATCATACCAAGGGCCGCAGTTGTGCAATATATTCTGACAAAAGGTTTACTAAAAAAGAATGCAAGCTTAACTAATCCATTTATAGTCAGCGATAAGGTGTTCCTTGAAAGATATGTAAACCGTTATAAGGAAGAGTCATCTTATCTATTAAAGCTTTATAAAGAAAATCTGGATCTTGCACACGCCAGGGACGAAACCGATACAATGTCATGA 1167 0.3556 MLSSHRHRTFLYLNKALNPNPIFHNYPSLFSPHFCTNTSDSTSFAVSYLINNFGFTPQSASKLCSTYNVRFKTTQKPDYVLKFFRNQGLVDSQIRNMISKAPWLLTCNPSKRVLPKFQFLLSKGASNSDIVNLVSKNPLVLSPSLENHIVPTYELLYRFLKSDKNVIASTFGNPTLFTHHMVSRNIKLLIENGVIDSNISNLIRIQSTVLCRNDNEFLNVVKELKDLGFNPTKSLFYVALLAKITVTKTRWEEKVDTFKKWGWSDEDVLEAFKKQPQCMLTSIDKINSVMSFWVNQLGWDARAIVKLPRVFGSSLERRIIPRAAVVQYILTKGLLKKNASLTNPFIVSDKVFLERYVNRYKEESSYLLKLYKENLDLAHARDETDTMS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01893 388 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 17 379 - -
Tsu07g01893 388 PANTHER CGI-12 PROTEIN-RELATED 17 379 IPR003690 GO:0003690|GO:0006355
Tsu07g01893 388 SMART mt_12 200 230 IPR003690 GO:0003690|GO:0006355
Tsu07g01893 388 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Tsu07g01893 388 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Tsu07g01893 388 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Tsu07g01893 388 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Tsu07g01893 388 Pfam mTERF 81 230 IPR003690 GO:0003690|GO:0006355
Tsu07g01893 388 Pfam mTERF 247 353 IPR003690 GO:0003690|GO:0006355
Tsu07g01893 388 Gene3D Transcription termination factor 3, mitochondrial 53 176 IPR038538 -
Tsu07g01893 388 Gene3D Transcription termination factor 3, mitochondrial 177 370 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01893 Tsu-Chr7 19099393 19103418 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu07g01893 mTERF 4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01893 K15032 - gmx:102663414 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04223 04 50502610 50503997 Tsu07g01893 07 19099393 19103418 PCT