Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01890 atgtttAATCTATGGCGCCACAAAACCCTTCTCAACCCAGTTACTTTCTCACTATCCTTAAACCCTAACCCTTTTTTCCACCATTACCCATTACCATTTTCTCTGCATTTCTGCACCAACACTTCAAATTCAACCTCATTTGCAGTCTCATACCTCATCAACAATTTTGGGTTTTCCCCACAATCTGCTTCCAAACTTTGTTCCACTTACAATGTTAGTTTTAAGACTGCCCAAAAACCTGATTCTGTTCTCAATTTCTTTAGAAATTATGGTTTCTCAGATACCCAATTACGCGATATCATTGCAAAATCACCACGGCTACTTTCCTGTGATCCCTCCAAAAGGGTGTTgccaaagtttcaatttttcctCTCCAAAGGTGCTTCTGAAGCTGACATTGCTAACCTTGTTAATAAGTACCCTATAGTCCTGTCTATAAGCCTCGAGAATCGTATAATCCCAGCTTATGAATTGGTTTATAGATTCTTGAAATCTCACAAAGACACTTATCAATTGCTTAATTACAATtcaaatttctttgtaaaaacTCGGGCAAAGCATAACATGAGAGTTCTGGTTGAGAATGGAGTGTCAGACTCAAACATCGCGAGAATACTTCGACTCCGGAGTCGGACAATTGAAAACCCAGACATGGTGAAGTTATTGAAGGAATTAAAGGATTTAGGGTTTAATCCTTCAAAATCACCTTTTGGTATAGCATTGTTGGCCAAAACAACTGTAAGAAAAACTCTGTGGGAAAAGAAAGTTGATGCCTTTAAGAAGTGgggttggtctgatgaagatgttCATAAAGCATTTAGATTGCAGCCTTTTTGTATGTTAACATCCATTGGTAAAATCAATATATTGATGAGTTTTTGGGTCAATCAGTTGGGTTGGGATGCTCGTGCCCTTGCCAAAGAACCGGCGTTATTTTTGttaagttttgaaaaaaggATCATTCCAAGGGCACAAGTAGTGCAGTTTCTGCTAAAGAAAGATTTGCTGCGAAGAAAGAATTTAAGCTTAACTCGTCCATTTATAGGGCCTGATAAGTTGTTTCTTGATAAGTTTATAAAACGTTTTAAGGAGGAGTCTTCTGATCTATTAAAGCTGTATGAGGAAAAACTCAAGCTCGCATACACCACGGACAAAACTTGCATTTAA 1167 0.3556 MFNLWRHKTLLNPVTFSLSLNPNPFFHHYPLPFSLHFCTNTSNSTSFAVSYLINNFGFSPQSASKLCSTYNVSFKTAQKPDSVLNFFRNYGFSDTQLRDIIAKSPRLLSCDPSKRVLPKFQFFLSKGASEADIANLVNKYPIVLSISLENRIIPAYELVYRFLKSHKDTYQLLNYNSNFFVKTRAKHNMRVLVENGVSDSNIARILRLRSRTIENPDMVKLLKELKDLGFNPSKSPFGIALLAKTTVRKTLWEKKVDAFKKWGWSDEDVHKAFRLQPFCMLTSIGKINILMSFWVNQLGWDARALAKEPALFLLSFEKRIIPRAQVVQFLLKKDLLRRKNLSLTRPFIGPDKLFLDKFIKRFKEESSDLLKLYEEKLKLAYTTDKTCI 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01890 388 Pfam mTERF 84 221 IPR003690 GO:0003690|GO:0006355
Tsu07g01890 388 Pfam mTERF 252 352 IPR003690 GO:0003690|GO:0006355
Tsu07g01890 388 PANTHER CGI-12 PROTEIN-RELATED 15 381 IPR003690 GO:0003690|GO:0006355
Tsu07g01890 388 Gene3D Transcription termination factor 3, mitochondrial 157 372 IPR038538 -
Tsu07g01890 388 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 15 381 - -
Tsu07g01890 388 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Tsu07g01890 388 SMART mt_12 134 169 IPR003690 GO:0003690|GO:0006355
Tsu07g01890 388 SMART mt_12 302 336 IPR003690 GO:0003690|GO:0006355
Tsu07g01890 388 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01890 Tsu-Chr7 19082060 19084298 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu07g01890 mTERF 5.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01890 K15032 - gmx:102663414 355.91