Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01888 ATGTTAACTACAAATCTTCATAGACCTTTTCTCTATCTCAAAAACCTGATTCTGTTCTCACTAAAACCTAACCCTCTTCTTCTCTACAAAAACCCATCATTGCCATTTTCTCTGCATTTTTGCACCAACACTTCAGATTCAACCTCTTTTGCAGTTTCCTACCTCATCAACAATTTTGGGTTTTCCCCAAAATCTGCTTCCAAACTTTGTTCCACTTACAATGTTAGTTTTAAGACTGCCCAAAAACCTGATTCTGTTCTCACATTCTTTAGAAACCATGGTTTTTCAGATTCCCAACTTCGCAATATGATTGCAAAATCACCAGGGCTACTTTCCTGCAACCCCTCCAAAAGGGTGTTgccaaagtttcaatttttactCTCCAAAGGTGCTTCTAACTCTGACATTGTTAACATCGTCAGTAAGAAGCCCAGAATCTTGTCTATAAGCTTGAAAAATCATATAGTCCCAACTTATGAATTGGTTTATAGATTCTTGAAATCGGACAAGGACATTATTGCTCGTGAAATGCGATATGCAACTTTATTTGGTGACCGTAATCTGCCACATAACATCACAATGCTGATTGAGAATGGAGTTACAGACTCAACCATTGCAAGAATGCTTTGGACGTCTCGGACATTGAATACGAATACTCATTGCATGCTGAAGTTGGTGGAGGAATTGAAGGATTTGGGTTTTAATCCTTCAAAAATAACCTTTGGTATAGCATTGGAAGCCAAAATTACCGTAAACAAAACAATGTGGAAAGAAAAAGTTGATGCCTTTAAGAAGTGGGggtggtctgatgaagatgttCTAGAAGCATTTAGAAAGGTGCCTCATTGTATGTTAACATCcattgataaaattaatttagtgaTGAGCTTTTGGGTCAATCAGTTGTGTTGGGATGCGCTTGCCCTTGTAAAAGGACCAAATGTTTTTTCAAATAGTTTGGAAAAATGGATCATTCCAAGGGCCTCAGTTGTGCAATTTCTGCTGAAGAAAGGTTTGCGAAAAAAGAATGCAAGCTTAACTTATCCATTTCTAGTGTCTGAGAAGTTGTTTCTTGATAGacTCTTACACAAACCAGTGACAAAACCGGCATGTCATGATCAAGATTTCAGCTATACTGGAATAGGTTGCAGGATTCAAAATGGTTTCAAGTAG 1173 0.3598 MLTTNLHRPFLYLKNLILFSLKPNPLLLYKNPSLPFSLHFCTNTSDSTSFAVSYLINNFGFSPKSASKLCSTYNVSFKTAQKPDSVLTFFRNHGFSDSQLRNMIAKSPGLLSCNPSKRVLPKFQFLLSKGASNSDIVNIVSKKPRILSISLKNHIVPTYELVYRFLKSDKDIIAREMRYATLFGDRNLPHNITMLIENGVTDSTIARMLWTSRTLNTNTHCMLKLVEELKDLGFNPSKITFGIALEAKITVNKTMWKEKVDAFKKWGWSDEDVLEAFRKVPHCMLTSIDKINLVMSFWVNQLCWDALALVKGPNVFSNSLEKWIIPRASVVQFLLKKGLRKKNASLTYPFLVSEKLFLDRLLHKPVTKPACHDQDFSYTGIGCRIQNGFK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01888 390 Pfam mTERF 249 357 IPR003690 GO:0003690|GO:0006355
Tsu07g01888 390 Pfam mTERF 87 238 IPR003690 GO:0003690|GO:0006355
Tsu07g01888 390 PANTHER CGI-12 PROTEIN-RELATED 28 362 IPR003690 GO:0003690|GO:0006355
Tsu07g01888 390 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 28 362 - -
Tsu07g01888 390 Gene3D Transcription termination factor 3, mitochondrial 71 180 IPR038538 -
Tsu07g01888 390 Gene3D Transcription termination factor 3, mitochondrial 181 368 IPR038538 -
Tsu07g01888 390 SMART mt_12 137 173 IPR003690 GO:0003690|GO:0006355
Tsu07g01888 390 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Tsu07g01888 390 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Tsu07g01888 390 SMART mt_12 206 235 IPR003690 GO:0003690|GO:0006355
Tsu07g01888 390 SMART mt_12 101 132 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01888 Tsu-Chr7 19073633 19075260 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu07g01888 mTERF 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01888 K15032 - gmx:102663414 372.474