Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01886 ATGGAATTCTCCAATGCTGAAATCCCAACCCTTCAAACCCCTCTTTTTTTCAACCTAAATCAAATCACAACAATACCcttcaaaaccctaaaattcaaTTCCTCTCTATCAACAACCCTCTCTTTGAACCACAATTCCTCAACCACTTCACAACAAACTCAATTCAAAGCTTCAAAACCTGTTCAATTCGACACTTCCCAAAAATCCAATTCAGTAATCGATATCTTCAAAATATACGGTTTTTCTGATACCCAGATAAACAAAATTGTTAGACAAGTACCCAGTATTGTTAATTCTGGCCCCAACAAAACGATTTTGCCAGAGTTTGAATTTTTAAGCTCAAAATGTGCTTCAAATTCAGAGATTGTGGAGATTGTTTGTAGAATCCCTAGAATTCTTTATTCAAGTCTCGAGAATAGTATAATTCCTACATTTGAATTGTTCAGAAGTCATTTGAGGAATGCTTTGAATGTGGTTAAGGAAATGGGATTTGATGATCCTTCTAATGTTAAGTTTGTTATAGCATTGTTAGCCACATCGAAATCTAGTTGGGATGCAAAAGTTGATGTTTTTAAGAGATGGGGTTGGTCGGAAGAAATGGTTCTTGAAGCGTTTAGGAAACGGCCCTTGTGTATGCTAGCATCTGTGGAGAAAATTAATAAGGTGATCAAATTTTGGGTGAATGAGTTGGATTGGAACTCTTCGGCTCTTGTGAAAAGGCCAGAGGTCTTTTCGTATAGTTTGGAGAATAGGATCATTCCAAGGGCTAGTGTTGTCTCATATTTGATCTCCAAAGCTGAGACTTTTTACTGTGATGACTGTGATGGTGTGGTGCAATCTATCAGACAACAAGTTAGTAGTGATAAAACTAGCATTCTCTTTTCAAAAAATGTTTCTAGAAGTAAAAGAGTGGAGCTTGTTAGGTTATCTGGATTTCGTGAGACCACAAACTTGGGTGACACTCCCGAGACTACCATGCATGTGTTGCGGGGTTGTCCTATGGCTATGATGGTATGGATTCGGGTGATTGAAGAGGATATTAGAGGGAATAGGATTTCCTCCGGTTATTGTGTCCTGTTGCAACTGATCTCAATCGTCCGATCTAAAATCGGTGACTGGGAttaa 1125 0.3769 MEFSNAEIPTLQTPLFFNLNQITTIPFKTLKFNSSLSTTLSLNHNSSTTSQQTQFKASKPVQFDTSQKSNSVIDIFKIYGFSDTQINKIVRQVPSIVNSGPNKTILPEFEFLSSKCASNSEIVEIVCRIPRILYSSLENSIIPTFELFRSHLRNALNVVKEMGFDDPSNVKFVIALLATSKSSWDAKVDVFKRWGWSEEMVLEAFRKRPLCMLASVEKINKVIKFWVNELDWNSSALVKRPEVFSYSLENRIIPRASVVSYLISKAETFYCDDCDGVVQSIRQQVSSDKTSILFSKNVSRSKRVELVRLSGFRETTNLGDTPETTMHVLRGCPMAMMVWIRVIEEDIRGNRISSGYCVLLQLISIVRSKIGDWD 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01886 374 SMART mt_12 123 154 IPR003690 GO:0003690|GO:0006355
Tsu07g01886 374 SMART mt_12 202 233 IPR003690 GO:0003690|GO:0006355
Tsu07g01886 374 SMART mt_12 234 268 IPR003690 GO:0003690|GO:0006355
Tsu07g01886 374 SMART mt_12 87 118 IPR003690 GO:0003690|GO:0006355
Tsu07g01886 374 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 148 266 - -
Tsu07g01886 374 Pfam mTERF 175 261 IPR003690 GO:0003690|GO:0006355
Tsu07g01886 374 Pfam mTERF 74 161 IPR003690 GO:0003690|GO:0006355
Tsu07g01886 374 Gene3D Transcription termination factor 3, mitochondrial 34 273 IPR038538 -
Tsu07g01886 374 PANTHER CGI-12 PROTEIN-RELATED 148 266 IPR003690 GO:0003690|GO:0006355
Tsu07g01886 374 PANTHER CGI-12 PROTEIN-RELATED 12 152 IPR003690 GO:0003690|GO:0006355
Tsu07g01886 374 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 12 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01886 Tsu-Chr7 19047700 19050679 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu07g01886 mTERF 3.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01886 K15032 - gmx:100792944 217.624