Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01863 ATGCTTGAAAATGACCCTTGTTCGTTAAGATTCATGAGCCCTCCTTCTAGAAGTGATTGTTTCCATAATGCTACGGAAGTACAAGTAGCAGGAGGAGCTGCCGGCGAAGATAGAGTTCAAGCAGTTTGTTCCGAAGAAAAGGGGTGGCTTTTTTGCGCAATTTATGACGGCTTTAATGGGAGAGATGCAGCGGACTTTCTCGCTTGTACCCTTTATGACTCTATTGTATCTTACCTAAATACAATAGATTGGGATTCAGAACCAAATTCAATCAAGAACGCTTCTGACAACGAGTGTTTGGATGATAGTCGTATTCTCGACGGACGTCAATCTTCATCGAGTAAATCATTTTCACATGTGGTACTTGATAACCTCAAACACATTCTTAGTCAGGTTGAGAATGAtttcttgtacatggttgagcAGGAAATGGAGGAGCGTCCAGATTTAGTCTCAATTGGATCTTGTGTTTTACTCGTGCTTCTTCACGGGAATGACTTGTGTACCCTCAATCTAGGGGATAGCAGAGCAGTCCTTGCGACATGCAGTACAAGTAACGGAATGAACGGGAATGAGAGATTGAAAGCTATTCAGCTTACTGATAGTCATACTGTTGACAATGAAGATGAAAGAACTCAACTTCTTGCTAATCATCCTGATGATCCTAAGACCATTGTATCAGGGAGAGTAAAAGGAAAGTTGAAGGTTACGCGTGCTTTTGGAGTTGGCTACTTGAAAAAGaaaattttgaatgatgCATTAATGGGAATCCTTCGAGTTCGTGATCTTAAAAGCCCGCCATATGTTTCAACAGAACCATCACTAAATGTGCATAAAATCTCTACTTCTGATCAATTTGTTATAGTTGCAAGTGATGGTTTATTCGACTTCTTCAGCAATGAGGAAGCAGTAAATCTCGTTGAGTCTTACATCTTGAGCAATCCTCATGGTGATCCAGCTAAATTTCTCATTGAAGAATTAGTAACAAAAGCAGCTGATTCTGCAGGTTTCACCACGGAGGAGTTGATGAATGTTCCAGATGGGAGGAGGAGAAAGTATCACGATGATGTCACTGTAATGGTGATCATCCTTGGGATGAATAAACGGACTTCAAAGGCATCAATTTGCATCTAA 1134 0.3968 MLENDPCSLRFMSPPSRSDCFHNATEVQVAGGAAGEDRVQAVCSEEKGWLFCAIYDGFNGRDAADFLACTLYDSIVSYLNTIDWDSEPNSIKNASDNECLDDSRILDGRQSSSSKSFSHVVLDNLKHILSQVENDFLYMVEQEMEERPDLVSIGSCVLLVLLHGNDLCTLNLGDSRAVLATCSTSNGMNGNERLKAIQLTDSHTVDNEDERTQLLANHPDDPKTIVSGRVKGKLKVTRAFGVGYLKKKILNDALMGILRVRDLKSPPYVSTEPSLNVHKISTSDQFVIVASDGLFDFFSNEEAVNLVESYILSNPHGDPAKFLIEELVTKAADSAGFTTEELMNVPDGRRRKYHDDVTVMVIILGMNKRTSKASICI 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01863 377 SUPERFAMILY PP2C-like 33 365 IPR036457 -
Tsu07g01863 377 ProSiteProfiles PPM-type phosphatase domain profile. 21 364 IPR001932 -
Tsu07g01863 377 Gene3D - 8 373 IPR036457 -
Tsu07g01863 377 PANTHER PROTEIN PHOSPHATASE 2C 87 376 IPR015655 GO:0004722|GO:0006470
Tsu07g01863 377 PANTHER PROTEIN PHOSPHATASE 2C 2 89 IPR015655 GO:0004722|GO:0006470
Tsu07g01863 377 CDD PP2Cc 34 364 IPR001932 -
Tsu07g01863 377 SMART PP2C_4 20 362 IPR001932 -
Tsu07g01863 377 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 2 89 - -
Tsu07g01863 377 Pfam Protein phosphatase 2C 112 332 IPR001932 -
Tsu07g01863 377 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 87 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01863 Tsu-Chr7 18696959 18698914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01863 13 377 PP2C-type Phosphatase Gene Family AT3G16560 66.667 5.37e-168 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01863 - - gmx:100791404 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01863 07 18696959 18698914 Tsu07g01863 07 18696959 18698914 ECH
Tsu04g04235 04 50584736 50586689 Tsu07g01863 07 18696959 18698914 PCT