Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01814 ATGGGAGCACATAACAATGTTGGCTGTGACCAAAGGTTTGCACTTCTTGGTATCTCTTCCATACTTCTTGTCGCTATGATCGGGACGGTCGCTGGACAACAAAATAGCGTAGAAATGCTTTGTCAATCAACACAATACCAAGAAACATGTCACAAGAGTCTTGAAAAAGCACCGAGTGATACAACCGATATGAAAGGGCTTCTTAAAGCTGCGTTCGACGCAACAGCTGATGAGTTAAAGAAACATATCAACAATACATCTCTTTATCAAGAATTGGCGAAAGACGACATGACAAAACAAGCAGTTGAAGTTTGTAATGAAGTGTTGGATTATGCTGTTGATGGAATGCATAAATCTGTTGGTACATTAgataaatttgatttcaataAGGTAAATGAATATGCCTATGATCTCAAAGTTTGGTTAACTGGTACACTTTCACATCAACAAACATGTTTAGATGGTTTCGAGCATTCCAAAACGAAAGCCGGTGAACAAATGGCTAAGGTTTTGAACACTTCTATGGCATTAAGTAGTAATGCTATTGACATGCTTAATGCTGTTTCTGGCTTACTAAGTAATCTTAATAAAAACACACATAATAGGAAGCTTTTGTCACTCGTCGATGGTTATCCTTCATGGGTTAGCGAAGGTCAACGCCGTCTTCTTGCCGATGCTGAAGTTAAACCTAATGCTGTTGTGGCTCAAGATGGTAGTGGACAGTTCAAGACATTAACCGATGCTCTTAAAACCGTTCCTGCTAATAATGCACAACCTTTTGTGATTCATGTTAAGGAAGGTGTTTATAAGGAGACTGTTAATGTGGCTAAGGAAATGACTTATGTTACTATCATTGGTGATGGTCCTACAAAGACTAAATTCTCTGGTAGCCTTAACTTTGCTGATGGTTTGCTACCTTACAACACCGCAACTTTCAGTGTTAATGGTGCAAACTTCATCGCAAAGGATGTTGGCTTCGAAAACACAGCAGGATCAGACAAACGTCAAGCACTTGCACTCCGAGTAACAGCAGATCAAGCAATCATCTACAACTGTCAAATAGATGGTTACCAAGCCACACTCATGGCTGAATCTCAACGCCAATTCTTCCGTGACTGCAGTGTCTCCGGCACAGTTGACATGATCTTCGGTGATGCCTTCGGAGTTTTCCAAAACTGCAAACTAACCATAAGAAAACCAGCAGATGATCTGGAAAACCAAAATTGTAATGTAGCTGCCAACGGAAGAACCAAATCCGATAGCGCAAGTGGTTTCGTTTTCCAAAGTTGTCAATTCACCGGTGAACCAGAAGTAGCCAAGATGGATCCCAAGATAGCATACCTAGGAAGACCATGGAAGGCATATTCCAAAGTTGTTATTATGGATTCTGTCATTGATGACATGTACAACCCTGAAGGTTACTTACCATGGATGGGAAGTGCTTTTCTTGATACATGTACTTTCTATGAGTATAACAATAAAGGTCCTGGTGCTGATTCATCAAAGAGAGTTAAATGGGTTGGTGTTAAGACTATTACAGCTACTGAAGCAGCTGCTTATTACCCTGGCAAATTCTTTGAGCTTGCTAATTCATCTGATCGCGATACTTGGATTGTGAAATCTGCGGTTCCTTATTCACTTGGTGCTTTGGATGCTAAAACTAATCCTCTTGATCCTACTGGTGGTCATGGAGCCGGAGCCGGAGCTGGAGCTGGAGCAAAGAACAGCGGTTTCGTTAACCAAGGTAATATTTGGCTTCAAGTGATTCTTTTGGTTGGGATATTTTCactatcatcatcttcattcaaCTTGTTCTAG 1818 0.4015 MGAHNNVGCDQRFALLGISSILLVAMIGTVAGQQNSVEMLCQSTQYQETCHKSLEKAPSDTTDMKGLLKAAFDATADELKKHINNTSLYQELAKDDMTKQAVEVCNEVLDYAVDGMHKSVGTLDKFDFNKVNEYAYDLKVWLTGTLSHQQTCLDGFEHSKTKAGEQMAKVLNTSMALSSNAIDMLNAVSGLLSNLNKNTHNRKLLSLVDGYPSWVSEGQRRLLADAEVKPNAVVAQDGSGQFKTLTDALKTVPANNAQPFVIHVKEGVYKETVNVAKEMTYVTIIGDGPTKTKFSGSLNFADGLLPYNTATFSVNGANFIAKDVGFENTAGSDKRQALALRVTADQAIIYNCQIDGYQATLMAESQRQFFRDCSVSGTVDMIFGDAFGVFQNCKLTIRKPADDLENQNCNVAANGRTKSDSASGFVFQSCQFTGEPEVAKMDPKIAYLGRPWKAYSKVVIMDSVIDDMYNPEGYLPWMGSAFLDTCTFYEYNNKGPGADSSKRVKWVGVKTITATEAAAYYPGKFFELANSSDRDTWIVKSAVPYSLGALDAKTNPLDPTGGHGAGAGAGAGAKNSGFVNQGNIWLQVILLVGIFSLSSSSFNLF 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01814 605 SMART PMEI_2 32 184 IPR006501 GO:0004857
Tsu07g01814 605 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 188 IPR035513 -
Tsu07g01814 605 Gene3D - 228 551 IPR012334 -
Tsu07g01814 605 SUPERFAMILY Pectin lyase-like 229 540 IPR011050 -
Tsu07g01814 605 ProSitePatterns Pectinesterase signature 1. 256 275 IPR018040 -
Tsu07g01814 605 PANTHER PECTINESTERASE 33 552 - -
Tsu07g01814 605 TIGRFAM PME_inhib: pectinesterase inhibitor domain 13 186 IPR006501 GO:0004857
Tsu07g01814 605 CDD PMEI-like_3 40 190 - -
Tsu07g01814 605 Pfam Pectinesterase 231 525 IPR000070 GO:0030599|GO:0042545
Tsu07g01814 605 Pfam Plant invertase/pectin methylesterase inhibitor 36 183 IPR006501 GO:0004857
Tsu07g01814 605 PANTHER PECTINESTERASE 33 552 - -
Tsu07g01814 605 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 189 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01814 Tsu-Chr7 18044826 18047298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01814 36 545 Carbohydrate Esterase AT5G49180 45.785 1.21e-165 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01814 K01051 - gmx:100784682 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04260 04 50751982 50758518 Tsu07g01814 07 18044826 18047298 PCT