Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01810 AAAGTGATGCGTGTTGCTGAGACTGATAAGGTTCCTAAGCTTTATATTAAGGCTCTTGTTTTGTTGGAAGATTTCTTGGCTCAGGCTTTGGCAAATAAGGATGCCAAGAAGAAGATGAGTAGTAGTAATGCCAAAGCCTTGAACTCGATGAAGcagaaattgaagaagaatAATAAGCAATATGAGGAGCTGATTACTAAATGTAGGGAGAGTCCTGAGAGCGAGGAGGATAAGGATGACGATGATGATACTGACGACGACGATGAGACTGATGATGAGATTATTGAGCCTGATCAGCTTCGGAAGCGGGAACCAAAATCAGATTCGGATAATGAATACGATGATGGAAAGGATGATGCTGGTGATGGACCTTGGGACCAAAAGCTTAGCAAAAAGGATAGACTTTTGGATAGACAGCTCATGAAAGACCCTAGGGAGGTCACATGGGATATCGTTAACAAGAAGTTTAAGGAGATTGTGGCAGCTAGGGGAAAGAAGGGAACTGGAAGGTTTGAACAGGTTGAACAACTTACCTTCTTAACAAAAGTGGCTAAAACACCAGCACAGAAGCTTGAAATTCTGTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGTCTCAGTGGCCATATGCCCATAACTGTGTGGAAAAAATGTGTTCAGAATATGCTGCTCATCCTTGATATTCTAGTTCAATTTCCAAACATAAAGGTTGATGATTCAGTGGAGCCAGATGAGAATGAAACTCAAAAAGGGGCTGACTATGATGGACCAATTAGGGTTTGGGGTAACTTAGTTGCCTTCTTAGAAAAAATAGATACTGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACACGTGAGTACGTCCAGAGACTCAGAGATGAGCCCATGTTTTTGGTTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGGAGTGGAGATTTCAAAGCATCTTCTAAGGTGGCCTTGAGGAGGGTTGAACTCATTTACTACAAACCACAAGAGGTTTATGATGCCATGAGAAAATTGGCTGAGCTGACAGAAGATGATGAAGGCGAGGCTAGCGAGGAGTCCAAAGGGTTTGAGGATACAAGAATTCCTACTGCATTTGTTGTTACTCCAGAGCTTGTGTCTCGGAAACCCACCTTCCCCGAGAATAGCAGGGCCCTAATGGATGTATTAGtttcacatatatacaaatatggTGACGAGCGCACTAAAGCACGGGCAATGCTTTGTGATATATATCACCATGCTCTCCTTGATGAGTTCTCAATAGCCCGTGATCTGCTGCTTATGAGTCATTTGCAAGATAATGTTCAGCACATGGACATTTCAACACAGATACTCTTTAACAGGGCTATGTCACAGTTAGGTCTTTGCGCTTTTCGGATTGGATTGATTTCTGAAGCACATGGCTGCCTAGCTGAACTTTATTCAGGTGGAAGGGTGAAAGAGTTGCTTGCACAAGGTGTGTCACAAAGTCGTTATCACGAGAAAACTCCAGAACAGGAGAGGTTGGAAAGAAGACGCCAGATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAAGCAGTGCATCTTATATCTGCTATGCTGCTGGAGGTTCCCAATATGGCAGCCAATGTTCATGATGCAAAGCATAGGGTCATCAGCAAGAATTTCCGCCGTTTGCTTGAGGTCAGTGATAGACAAACATTGACTGGTCCTCCTGAGAGTGTCAGAGATCACATTATGGCTGCCACTAGGGCTCTTATTAAAGGAGACTTCAACAAGGCTTTTGAAGTCATTACCTCTCTTGATGTATGGAAATTTGTTAAAAATCGAGACACCGTATTGGAAATGCTGAAGGACAAAATCAAGGAAGAGGCACTTAGGACGTATCTCCTTACCTACTCTTCATCCTACGAGTCTCTGAGTCTGGATCAAGTCACGAAATTTTTCGACCTATCTGTTGCTCGTACTCATAGCATTGTGAGTAGGATGATGATCAACGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGCATTGTTTTCCAAAATGTTGAGCACTCTAGGCTGCAAGCATTGGCTTTCCAATTGACAGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCCACAGAGGCAAGAATAGGTGGTGGATTGGATCTGCCTCCAAGACGAAGGGATGGACAGGACTATGCTGCTGCTGCTGGTGGAGGTGGTGGAACAGGGCCTTCAGGTGGTAGGTGGCAGGACTTGTCCTATTCTCAGACACGGCAAGGGAGTGGACGTGCAGGCTATGGTAATGCTGGTGGAAGGCCATTGGCATATGGTCAAGCAGCTAGGAGTGGCTATTCAAGGGATCGCGTGGGGCGTGCTGGTTATCAGAGTTCAGGGAGGAGTAATCAAGGTGGTTCAGGACTGAGGGGATCCCAAGGAGAGGTATCTACTCGCATGGTTAGCCTTAAGGGTGTTCGTGCTTAA 2490 0.441 KVMRVAETDKVPKLYIKALVLLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELITKCRESPESEEDKDDDDDTDDDDETDDEIIEPDQLRKREPKSDSDNEYDDGKDDAGDGPWDQKLSKKDRLLDRQLMKDPREVTWDIVNKKFKEIVAARGKKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPITVWKKCVQNMLLILDILVQFPNIKVDDSVEPDENETQKGADYDGPIRVWGNLVAFLEKIDTEFFKSLQCIDPHTREYVQRLRDEPMFLVLAQNVQEYLERSGDFKASSKVALRRVELIYYKPQEVYDAMRKLAELTEDDEGEASEESKGFEDTRIPTAFVVTPELVSRKPTFPENSRALMDVLVSHIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDNVQHMDISTQILFNRAMSQLGLCAFRIGLISEAHGCLAELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNMAANVHDAKHRVISKNFRRLLEVSDRQTLTGPPESVRDHIMAATRALIKGDFNKAFEVITSLDVWKFVKNRDTVLEMLKDKIKEEALRTYLLTYSSSYESLSLDQVTKFFDLSVARTHSIVSRMMINEELHASWDQPTGCIVFQNVEHSRLQALAFQLTEKLSILAESNERATEARIGGGLDLPPRRRDGQDYAAAAGGGGGTGPSGGRWQDLSYSQTRQGSGRAGYGNAGGRPLAYGQAARSGYSRDRVGRAGYQSSGRSNQGGSGLRGSQGEVSTRMVSLKGVRA 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01810 829 MobiDBLite consensus disorder prediction 95 130 - -
Tsu07g01810 829 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 1 768 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tsu07g01810 829 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 828 - -
Tsu07g01810 829 Pfam PCI domain 558 686 IPR000717 -
Tsu07g01810 829 Coils Coil 44 71 - -
Tsu07g01810 829 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 828 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tsu07g01810 829 MobiDBLite consensus disorder prediction 718 829 - -
Tsu07g01810 829 MobiDBLite consensus disorder prediction 797 820 - -
Tsu07g01810 829 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 619 707 - -
Tsu07g01810 829 MobiDBLite consensus disorder prediction 35 54 - -
Tsu07g01810 829 MobiDBLite consensus disorder prediction 55 74 - -
Tsu07g01810 829 MobiDBLite consensus disorder prediction 75 94 - -
Tsu07g01810 829 MobiDBLite consensus disorder prediction 751 766 - -
Tsu07g01810 829 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 1 550 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tsu07g01810 829 SUPERFAMILY "Winged helix" DNA-binding domain 614 689 IPR036390 -
Tsu07g01810 829 SMART PINT_4 619 707 IPR000717 -
Tsu07g01810 829 MobiDBLite consensus disorder prediction 33 130 - -
Tsu07g01810 829 ProSiteProfiles PCI domain profile. 518 690 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01810 Tsu-Chr7 17938369 17942039 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01810 1 829 Eukaryotic Initiation Factors Gene Family AT3G56150 70.348 0.0 1066
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01810 K03252 - gmx:100781967 1316.6