Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01806 ATGTGTGGAGGTGCTATCATTTCTGATTTCATTGGTGTCAAGCGTGACCGTGACCTATGGTTTGAGCTTGATCCTTCTGTTGATTTACTTGGTCTTGGTGCTACTTTTAACACCCCCAATTTCAAAGAGTTACCACCCCTTAACTTTGAGAAATTCTTCTCTTCAGACAAAAAAGTGGTAGCATGTGACAATGCTGAGAAGAAGCAAAGTGTGGTAACAACAACTGTAGAGAAGAGTAAGAAAAGCACCGGAGGAAAAAGAGTCCGTAAGAATGTGTACAGAGGAATCAGGCAGAGGCCATGGGGCAAGTGGGCTGCTGAAATAAGGGACCCACAACAAGGTGTTCGTGTTTGGCTCGGTACTTTCCCGACCGCTGAAGAGGCTGCTAGAGCCTATGATGCTGCCGCCAAACGCATCCGTGGTGACAAGGCGAAACTCAATTTCCCCGACACTCCTGCCATGCGTCCTGCCACCGCTGCTGCTGATGCTGATGTCACTGCTCCTCCAATGAAGAAGCAGTGTCTTAGCCCCGATCAAGCTAGCTCTCAGGCTAGCTCAGAGTCTGCTGGGTCTTCTATTGGGTCTGAGCTTGATGAGGAAATggaaatcaaaaagaaaatgtcCGATCTTGAATGGATCCTCGGCTTGGATAATGATCTTCCTCATGTTCAAGCTCAGACCCAGCCTGAGCTTGAGCCCATGGGCTTTACCTTGCCTTCTGATTGGGACAACAACTTCCTGGACATGTGGTCTGGTGAAGACATGGTTGATCCCATTCACCTgatctataattag 795 0.4679 MCGGAIISDFIGVKRDRDLWFELDPSVDLLGLGATFNTPNFKELPPLNFEKFFSSDKKVVACDNAEKKQSVVTTTVEKSKKSTGGKRVRKNVYRGIRQRPWGKWAAEIRDPQQGVRVWLGTFPTAEEAARAYDAAAKRIRGDKAKLNFPDTPAMRPATAAADADVTAPPMKKQCLSPDQASSQASSESAGSSIGSELDEEMEIKKKMSDLEWILGLDNDLPHVQAQTQPELEPMGFTLPSDWDNNFLDMWSGEDMVDPIHLIYN 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01806 264 PANTHER EREBP TRANSCRIPTION FACTOR 1 169 - -
Tsu07g01806 264 ProSiteProfiles AP2/ERF domain profile. 92 149 IPR001471 GO:0003700|GO:0006355
Tsu07g01806 264 MobiDBLite consensus disorder prediction 175 193 - -
Tsu07g01806 264 MobiDBLite consensus disorder prediction 147 197 - -
Tsu07g01806 264 Gene3D AP2/ERF domain 92 150 IPR036955 GO:0003700|GO:0006355
Tsu07g01806 264 Pfam AP2 domain 92 141 IPR001471 GO:0003700|GO:0006355
Tsu07g01806 264 SMART rav1_2 92 155 IPR001471 GO:0003700|GO:0006355
Tsu07g01806 264 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Tsu07g01806 264 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Tsu07g01806 264 PANTHER DNA-BINDING DOMAIN 1 169 IPR044808 GO:0003700|GO:0009873
Tsu07g01806 264 CDD AP2 93 151 IPR001471 GO:0003700|GO:0006355
Tsu07g01806 264 SUPERFAMILY DNA-binding domain 92 150 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01806 Tsu-Chr7 17883573 17885412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01806 1 219 AP2-EREBP Transcription Factor Family AT3G16770 42.041 3.44e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu07g01806 AP2 1.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01806 K09286 - gmx:100817253 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01806 07 17883573 17885412 Tsu07g01806 07 17883573 17885412 ECH