Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01784 ATGAAACTCAGCAACAACAAAATTTCCATGCCAACTTCAACTTCACCGTTAAACTCCGGCAACAACCTCATCTCCGACCAGTTTCCGGCAGGTCTCCGTGTACTTGTTGTTGATGACGACCCAACTTGTCTCATGATCCTTGAAAGGATGCTTCGTTTTTGCCTCTACGAAGttACCAAATGCAAGAGAGCTGAGGTTGCATTATCACTTCTTAGAGAGAACAAAAATGGGTTTGACATTGTTTTAAGTGATGTGCATATGCCTGATATGGATGGATTCAAACTTTTAGAACATATTGGATTGGAGATGGATCTTCCTGTTATTATGATGTCGGCTGATGATGGAAAAAATGTGGTAATGAAAGGTGTGACACATGGTGCTTGTGATTATCTAATCAAACCGGTGCGAATTGAGGCTTTGAAGAATATATGGCAGCATGTGGTtaggaagagaaagaataagTGGAAGGATGTGAATCAATCTGGTGGATTCGATGAAAGAGATCGAGAGAAAAAGGTGTCCAGTGATGCTGATTACTCATCTTCAGCTAATGAAGGCAAGAGTTCGTCAAAGAAGAGGAgggatgaagaagatgaagcagATGACAGGGATGATTCTTCCACGTCGAAGAAGCCGAGAGTTGTTTGGTCTATTGAGCTCCACCAACAGTTCATGGCTGTTGTGAATCAATTGGGATTAGATAAGGCTGTTCCTAAAAAGATTATGGAAATGATGAATGTTCCTGGGCTCACTAGAGAAAACGTTGCTAGCCATCTTCAGaAATACCGTTTGTATCTTCGACGGTTGAGTGGAGTTTCCCAGCAGCAGAGTAACTTGAACAACTCCTTCATGAATCCACAAGACTCAATATTTGGGGCAACACCAATAAACGGGATTGATCTTCAAACTCTTTCAACTGCTGGCCACCTCTCGCCTCAAAGTCTAGCCAAGCTTCAAGCAGCAGGATTTTTCAGTTCCGAGAACTCAAAACTGACATTTGGAGAAGGACAACTGCAGCATATGAGCAGCATTAAACCGATGAACTTTCTTCACGGAATCCCTACCAACATGGAGCCAAAACAGTTCGCCAATTTCCATCAATCTGCTCAATCATTTGGCAGCACGAACACTCGAGTCAATGCCTCTTCTGCAAAGAGAAGCCCGTGGTTGATGCAGATGGCTCAGTCTCAACCAAGAGGTCATATGCTAAATGAGAATATCAATTCTCATACTACAAGGTTTCCATCATCTTCGATGCAACCTACAGGATCAAATGGAATTTCAATCAATAGTTTCCCTCTTAGATGCACTGCAGGTTCATCCAGTAGCAGTACAAATGGTGTGTTTCATGCCGAAGCTACTTCGGGAATCAAAGAATCAGGTGGATTtggttataatatttttaatgaactCCATCAGAAGTCCAATGATTGGGACTTAGCAAATATAGGTCTGTCATATGATGCTTCTCATCGTGCAAATCCTTTACAAGGTAGCATTGATGTCTCGCCGCCGATTTTAGGCAATCGTGGTTTTCACTCTATCCAACAGCCTCGTCAAAATAGAGATGGTATGAATCAAGGTAATCTCCAAAATGTTGGTCAACACCTCAATACACCTTTTGTTGACAATTCATTAAGGGTTAAGAGTGAAAGAATTCCGGATACAAACTCCGGGATTAACCCTTTCTCTGATCAATTCAGTCAAGAGGATCTCATGAGTGCATTTCTGAATCAGCACGAAGACATTGGTCCAATTGAAAATGAGTTTGACTTTGATGGATATTCCTTAGACAGCATTCCGGTTTATAACAGATCATGTTAG 1824 0.4052 MKLSNNKISMPTSTSPLNSGNNLISDQFPAGLRVLVVDDDPTCLMILERMLRFCLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNKWKDVNQSGGFDERDREKKVSSDADYSSSANEGKSSSKKRRDEEDEADDRDDSSTSKKPRVVWSIELHQQFMAVVNQLGLDKAVPKKIMEMMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQSNLNNSFMNPQDSIFGATPINGIDLQTLSTAGHLSPQSLAKLQAAGFFSSENSKLTFGEGQLQHMSSIKPMNFLHGIPTNMEPKQFANFHQSAQSFGSTNTRVNASSAKRSPWLMQMAQSQPRGHMLNENINSHTTRFPSSSMQPTGSNGISINSFPLRCTAGSSSSSTNGVFHAEATSGIKESGGFGYNIFNELHQKSNDWDLANIGLSYDASHRANPLQGSIDVSPPILGNRGFHSIQQPRQNRDGMNQGNLQNVGQHLNTPFVDNSLRVKSERIPDTNSGINPFSDQFSQEDLMSAFLNQHEDIGPIENEFDFDGYSLDSIPVYNRSC 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01784 607 Gene3D - 207 270 - -
Tsu07g01784 607 Pfam Response regulator receiver domain 34 142 IPR001789 GO:0000160
Tsu07g01784 607 ProSiteProfiles Response regulatory domain profile. 33 148 IPR001789 GO:0000160
Tsu07g01784 607 SUPERFAMILY CheY-like 31 154 IPR011006 -
Tsu07g01784 607 PIRSF RR_ARR_type-B 14 594 IPR017053 GO:0003677|GO:0003700|GO:0009736
Tsu07g01784 607 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Tsu07g01784 607 PANTHER TWO-COMPONENT RESPONSE REGULATOR 430 564 - -
Tsu07g01784 607 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Tsu07g01784 607 PANTHER TWO-COMPONENT RESPONSE REGULATOR 317 427 - -
Tsu07g01784 607 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 289 - -
Tsu07g01784 607 MobiDBLite consensus disorder prediction 158 176 - -
Tsu07g01784 607 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Tsu07g01784 607 Gene3D - 32 163 - -
Tsu07g01784 607 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 289 IPR045279 GO:0009736
Tsu07g01784 607 MobiDBLite consensus disorder prediction 158 211 - -
Tsu07g01784 607 SMART REC_2 32 144 IPR001789 GO:0000160
Tsu07g01784 607 PANTHER TWO-COMPONENT RESPONSE REGULATOR 317 427 IPR045279 GO:0009736
Tsu07g01784 607 PANTHER TWO-COMPONENT RESPONSE REGULATOR 430 564 IPR045279 GO:0009736
Tsu07g01784 607 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Tsu07g01784 607 MobiDBLite consensus disorder prediction 187 210 - -
Tsu07g01784 607 CDD REC_typeB_ARR-like 34 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01784 Tsu-Chr7 17616507 17619762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01784 66 602 Response Regulator Gene Family AT3G16857 45.397 1.09e-148 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tsu07g01784 Response_reg 4e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01784 - K14491 mtr:MTR_2g034960 1010.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01784 07 17616507 17619762 Tsu07g01784 07 17616507 17619762 ECH
Tsu04g04284 04 50958833 50963471 Tsu07g01784 07 17616507 17619762 PCT