Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01777 ATGTCAGAAGGAGCTAGTCTTGTGCTAGAATCATCTGAAAATGGCACAGATTTGTCTCAGGATGACATTGGCACTGTTGAGGAAACACCAGAGGAAACAATTTTGTCAAGACAAACTTCTGTGAACCTTGTTCCTTTTATTGGTCaaagatttatctctcaagaagCTGCTTATGAGTTTTATTGCAGTTTTGCTAAGCAATTTGGCTTTTCTATTAGACGACACCGCACCCGAGGGAAAGATGGGGTTGGCAGAGGAGTTACAAGGAGGGATTTTACTTGCCATCGCGGAGGATTTCCCCAAAATAAACCTTCTGAAGATGGGGGAGGGGGGAAGGCGCAAAGGAACCGTAAATCATCTCGCTGTGGTTGCCAAGCATATATGCGGATAGTGAAAAGGGTAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGAAACATCCACAATCACGAGTTGTTAAAATCCAATGAGGTGTGTCTTCTTCCATCACACTGTCCGATATCTCCTGATGATAAGAGCCGCATATGCCTATTTGCTAAAGCTGGAATGTCGGTAAGGCAAATGCTAAGATTAATGGAGCTAGAGAAAGGCATCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTAAGAAACTTGTTGCAGTCTTTCAGAAATGTGGATAAAGATAATGATGCTATTGATCTGATTGCAATGTGTAAGAGATTAAAGGATGAAAATCACAACTTCAAGTATGAATTCAAGATAGATAGTAATAACAGGCTTGAGTACATCGCATGGTCATACGGCTCATCAATTCAATCATATGAGGTATTTGGAGATGCTGTGGTTTTTGATACAACGTACCGAGTAGAAGCTTATGACATGCTGTTGGGAATTTGGCTTGGAGTGGACAATAACGGAATGCTATGTTGCTTTAGTTGTGCACTTCTACGTGATGAAAATATGCTGTCTTTTTCATGGGCTTTAAAGGCTTTCTTGGGCTTCATGAAAGGAAAAGCTCCGCAAACCATACTGACGGATCACAACACGTGGCTGAAAGACGCTATTGCTGTTGAAATGCCCGAAAGTAAACACGCCTTTTGTATATGGCATATTCTCTCCAAGTTCTCTGACTGGTTTTCTATACTTCTTGGATCACAATATGACGAGTGGAAAGCTGAGTTCCATCGGCTCTACAATTTGGAAATGGTGGAAGATTTTGAAGAAGGCTGGAGGCTAATGGTCAATAAATATGGACTCCATGCAAATAAACATATTATTAGCCTATACTCATTAAGGACATTTTGGGCTTTACCGTTCTTGAGACAATACTTCTTTGCAGGATTAACCAGTACATGTCAGACCGAGTCCATTAATGTTTTCATCCAACGGTTCTTGAGTGCACAATCTCAACCAGAACACTTTTTAGAGCAAGTGGCTGATATTGTTGATTTTAATGACCGAGCCGGAGCAAAGCAAAAGATGCAAAGGAAAATGCAGAAAGTGTGCCTCAAAACAGGTTCACCTATAGAATCCCATGCTGCCACTATACTTACTCCTTATGCCTTAAGCAAACTACAAGAAGAGCTAGTGTCGGCACCACAATATGCATCCTTTCTGATTGATGAAGGTTGTTTCCAGGTCAGACACCACTCTCAGACTGACGGAGGTTGCAAAGTGCTTTGGCTTCCTTGTCAAGAGCACATCAGCTGCAGCTGCCATCTGTTTGAGTTTTCTGGCATCTTATGTAAACATGTCCTACGAGTCATGTCAACTAATAACTGTTTTCACATCCCGGATCAATATTTACCAGTCCGTTGGCGAAGCATTGGTTCGTCTTCTCTTAACCATTTTCAGGGCACGACTAGCAGGGATCAGCCTGAAAGGATACAATTTTTGGAATCATTGGTTTCAACACTTCTAATGGAATCCGTTGAAACTGATGAACGCCTTGATGTTGCTTGTGACCAAGTTTCCATGGTGCTATCGCGTATCAAAACTCTTCCTCGGTCATCACATGGGGTAAATGACATTACATTTAATTATGCATCAGATTCATTGATCCTGCCAGAGGTAGAAGATACTGACGAAATGATTCATGGTTTTACAATTGCAAATACTCATGATTCTATGGCTTTAGGCAAGTTAAAGGAGAGAAGGGCAAGAGACGGAGTTGATCTCAGTAGAAAACGTAGGCAGTTCTCGGCACCATTATGTGCACAATATGGACATGATGAATCTGATTGCTCAATAATGGCAGATGATAATATAAATGAAGATGCATTACGGTATATTCAGTAG 2289 0.4085 MSEGASLVLESSENGTDLSQDDIGTVEETPEETILSRQTSVNLVPFIGQRFISQEAAYEFYCSFAKQFGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQNKPSEDGGGGKAQRNRKSSRCGCQAYMRIVKRVDFDVPEWRVTGFRNIHNHELLKSNEVCLLPSHCPISPDDKSRICLFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDKDNDAIDLIAMCKRLKDENHNFKYEFKIDSNNRLEYIAWSYGSSIQSYEVFGDAVVFDTTYRVEAYDMLLGIWLGVDNNGMLCCFSCALLRDENMLSFSWALKAFLGFMKGKAPQTILTDHNTWLKDAIAVEMPESKHAFCIWHILSKFSDWFSILLGSQYDEWKAEFHRLYNLEMVEDFEEGWRLMVNKYGLHANKHIISLYSLRTFWALPFLRQYFFAGLTSTCQTESINVFIQRFLSAQSQPEHFLEQVADIVDFNDRAGAKQKMQRKMQKVCLKTGSPIESHAATILTPYALSKLQEELVSAPQYASFLIDEGCFQVRHHSQTDGGCKVLWLPCQEHISCSCHLFEFSGILCKHVLRVMSTNNCFHIPDQYLPVRWRSIGSSSLNHFQGTTSRDQPERIQFLESLVSTLLMESVETDERLDVACDQVSMVLSRIKTLPRSSHGVNDITFNYASDSLILPEVEDTDEMIHGFTIANTHDSMALGKLKERRARDGVDLSRKRRQFSAPLCAQYGHDESDCSIMADDNINEDALRYIQ 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01777 762 ProSiteProfiles Zinc finger SWIM-type profile. 542 590 IPR007527 GO:0008270
Tsu07g01777 762 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 741 IPR031052 GO:0006355
Tsu07g01777 762 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 8 741 - -
Tsu07g01777 762 SMART 26again6 565 592 IPR006564 GO:0008270
Tsu07g01777 762 MobiDBLite consensus disorder prediction 1 22 - -
Tsu07g01777 762 Pfam MULE transposase domain 278 370 IPR018289 -
Tsu07g01777 762 Pfam SWIM zinc finger 564 587 IPR007527 GO:0008270
Tsu07g01777 762 MobiDBLite consensus disorder prediction 79 117 - -
Tsu07g01777 762 Pfam FAR1 DNA-binding domain 59 155 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01777 Tsu-Chr7 17556476 17561668 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu07g01777 FAR1 1e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01777 - - gmx:100778434 1392.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01777 07 17556476 17561668 Tsu07g01777 07 17556476 17561668 ECH