Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01773 ATGGGAAGAGCTCCTTGTTGTGAGAAAATTGGATTGAAGAAAGGAAGATGGACTGCTGAAGAAGATAAGATCTTGACCGATTACATCAAACAAAATGGTGAAGGATCTTGGCGATTTTTGCCTAAGAAAGCAGGTTTGTTAAGGTGTGGGAAGAGTTGCAGATTGAGATGGATAAATTATTTGAGAGCAGATGTGAAGAGAGGCAACATAGCACCTCATGAGGAAGAAATCATTGTCAAGTTACATGCTGTTCTTGGAAATAGGTGGTCTGTGATAGCATCACATTTACCCGGACGAACGGATAATGAGATAAAGAATTATTGGAACTCGCATTTGAGAAGAAAAATTTACTGCTTTATGAGATCCATAAATGAGTCTCCATCACCACTACCACCACTTGATATGGCATCTacatccaaaaaaatatttcaaggGAAAAAAATGAATCCAAAAATAGAAGAGAACAATAACATGTCCCTTGAACCAACTATGCCTGAAGAAGTTGAAGAAATTCCAatgaataatgttttttatgaaatggagggaaataataataatataaataatacaatttCATCATACCCTATCAAGATTAATGAATTAACTATTGATGAAGGTTTGGGACCATATAAATGGTTAGATGATGAAATTATGAAACTTCGTACCATGTTTGAAAATGGTATGAGAAGTTATGTTACACTTCATGAGAATAATGAAAAGGGTATTAATGAATATGAGTATAAGAATATGCATGTGGaaataatggaaaaaaataagGAAATGAAAAATGACATGATTTGGGGAGAATCATCTAATGGAGAGAGTGGAGAATTGTACAATTGTTGTTCATCAGTGAATTCTGGCACAGATTATGATCAATTGTCTGATTGGGATTTttgtgaagaagaaaaaatgaagacTTGCTTGTGGGGTACAGGTATTGGTGAAATCATGAATggtttttattag 969 0.3106 MGRAPCCEKIGLKKGRWTAEEDKILTDYIKQNGEGSWRFLPKKAGLLRCGKSCRLRWINYLRADVKRGNIAPHEEEIIVKLHAVLGNRWSVIASHLPGRTDNEIKNYWNSHLRRKIYCFMRSINESPSPLPPLDMASTSKKIFQGKKMNPKIEENNNMSLEPTMPEEVEEIPMNNVFYEMEGNNNNINNTISSYPIKINELTIDEGLGPYKWLDDEIMKLRTMFENGMRSYVTLHENNEKGINEYEYKNMHVEIMEKNKEMKNDMIWGESSNGESGELYNCCSSVNSGTDYDQLSDWDFCEEEKMKTCLWGTGIGEIMNGFY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01773 322 CDD SANT 72 112 IPR001005 -
Tsu07g01773 322 Pfam Myb-like DNA-binding domain 72 112 IPR001005 -
Tsu07g01773 322 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu07g01773 322 CDD SANT 16 61 IPR001005 -
Tsu07g01773 322 SMART sant 66 114 IPR001005 -
Tsu07g01773 322 SMART sant 13 63 IPR001005 -
Tsu07g01773 322 Gene3D - 13 66 - -
Tsu07g01773 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu07g01773 322 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu07g01773 322 PANTHER MYB TRANSCRIPTION FACTOR 2 289 - -
Tsu07g01773 322 Gene3D - 71 116 - -
Tsu07g01773 322 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu07g01773 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu07g01773 322 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu07g01773 322 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01773 Tsu-Chr7 17511877 17515563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01773 1 220 MYB Transcription Factor Family AT5G49330 52.361 9.38e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu07g01773 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01773 K09422 - gmx:100819041 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01773 07 17511877 17515563 Tsu07g01773 07 17511877 17515563 ECH