Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01760 ATGATGGCACAAAACTTGGGGCAACTTGTTGGTTCTGAGATACATGGATTTCATACTTTGAGAGACTTGGATGTTGGCGAAACCTTGGAGGAAGCAAAAAGCAGATGGCTTCGTCCGAATGAGATTCAGGCCATACTCAGcaattacaaatattttactATCCATGTCAAGCCATTGCATTTGCCCAAAAGTGGTACTGTTGTACTATTTGACCGCAAAATGCTTAGGAACTTTCGAAAAGATGGGCACAactggaaaaagaaaaatgatggGAAAACTGTTAAAGAAGCTCATGAGCATTTAAAAGTTGGTAATGAAGAGAGGATCCACGTATATTATGCACACGGCCAAGATAACCCAACTTTTGTTCGAAGATGTTATTGGTTACTTGATAAGAGTCTGGAGCACATAGTCCTTGTTCATTATCGTGAAACACAAGAGTCTCAAGGTTCTCCTGTTACAGTAAATTCAAATTCGAGTTCTACTTCTGATCCAACTACACCGTGGATTCTACCAGAAGACTTAGATACTGGAACCAACAGTGCTTATACTAATGGACTCAATGGGAATTTAACAGTCGAAAGTCATGAACAGAAGCTTCATGAGCTTAATACACTTGATTGGGATGATTTGGTGGCTTCTAATGCTAATATCCCTACTATACCTAATGGAGGCAATGAACCGTCTTTCTATCAACTAAATCAAAGCTTGCTAAATGGAAGCTTTAGCAATGTTGCTGGTAATACTTCTGCAGAAATTCCTTCGTTTAGCAATCCAACTCCGCCTGAGTCTGGAATTAGTCATGTTTCTTACAGTTTTCCAGAAAGTGTTAACCTTCAGAAGAATCATCCTATGACTTTTGGCGGTGTTGATTCCGTGGAGGACACTTTAGTCAATGAAGGTTTGCAAAATCAGAACAGCTTTGGAATGTGGATGAACAATGCCATAACTGATACACCATGTTCCGTAGAGGCGTCGGCTCTTGAATCATCAATTCCTTCATCTGTTCATGATCCATTTTCATCCCTGCTGATGGATAATAATCAGCAATCTTCTCTGCCAGAACAAGTATTTCATCTCACTGACGTGGCTCCTGCATGGGCTTCTTCCACTGAGAAAACAAAGGTCCTGGTAACTGGATATTTTCACAATGATTATCGACACCTTGCAAAGTCCAATCTAGTGTGCGTCTGCGGTGAAACAAGTGTTCCTGTAGAAATTGTTCAGGTTGGAGTTTACCGATGCTGGGTATCACCGCATTCTCCTGGATTCGTAAATCTCTATTTGAGCTTCGATGGCCATAAACCTATCAGCCAAGTTGTTAATTTTGAGTATCGCACTCCTATTTTGCACGATCCTGCTGCTTCAATGGAAGAGACATACAACTGGATTGAGTTTCGACTTCAGATGAGGCTTTCTAATTTGCTTTTTACAAGACCAAAGACCATTGATGTTTTCTCTAGTAAAGTATCACCTACTGCACTGAAAGAGACTAAAAAGTTTGCCTCCAAAACATTATTTGTTTCCAAAAGTTTGATACACTTTATGAAGTCGTCTGACGCAAACGCAATTCCATATCCGCATGCAAAAAATACCTTGTTCGAAATTGCGTTGAAAAACAAACTAAGGGAATGGCTTTTGGAACGAATTGTCTTAGGATGCAAGATTACCGAGTATGATGCACAAGGCCAAGGTGTAATTCATTTGTGTACACTTTTGGGATATACTTGGGCTATTGCTATGTTTTCATGGGCAGGCCTGTCGCTTGATTTCCGTGACAAATTTGGATGGACATCTCTTCATTGGGCAGCATATAATGGAATGGAGAAAATGGTTGCAACTCTGCTGTCTAGTGGGGCAAAGCCCAATTTGGTCACGGATCCAACTCCACAAAATCCTGGTGGCTGTACTGCTGCTGATCTTGCGTATATGAATGGATATGATGGTTTAGCGGCTTATCTTTCTGAAAAGTGTCTGGTTGAGCAGTTCAATGATATGAGCTTAGCTGGAAATATCAGTGGTTCACTCGTTACCACCACAAATGATCCAGTAAATCCTGAGAACCTTACTGAGGACCAGATGAACCTAAAGGATACATTGGCAGCTTACCGAACAACAGCTGAGGCAGCAGCACGCATACAAGCTGCGTTTAGAGAGCACTCACTGAAATTGCGATATCAGGCAGTTCAATTTATCAGCCCAGAGGAGGAAGCGCGCCAAATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAAATTTGAGACGAGAAAATCGATGGCAGCCGCTGCTCGGATCCAGTATAAATTCCGTTCATGGAAGCTGCGTAGAGAGTTTCTCAACATGCGACGTCAGGCTATTAAAATTCAAGCTGCATTTAGGGGATTTCAAATGCGTAGGGATTACCGTAAGATTCTATGGTCGGTTGGAATTCTTGAGAAAGTAATCCTGCGTTGGCGTTTAAAGAGAAAAGGTTTCCGTGGGCTTGAGGTGAATCCCGACGAAGAAATGAAAGATGAGAAGCAGGAAAGCGATGTAGAGGAGGATTTCTTTAAGACCGGTAGGAAACAAGCAGAAGAACGTGTTGAGAGATCTGTGGTACGTGTACAAGCCATGTTCCGTTCTAAGAAAGCGCAACAAGAGTATAGCAGGATGAAGATGGCACATAATCAAGCAAAGTTGGAACTTGAATTAGAAGAACTCATCAATCCTGATGTGGACATTTTAACACCAAAGACATCATAG 2745 0.4117 MMAQNLGQLVGSEIHGFHTLRDLDVGETLEEAKSRWLRPNEIQAILSNYKYFTIHVKPLHLPKSGTVVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPTFVRRCYWLLDKSLEHIVLVHYRETQESQGSPVTVNSNSSSTSDPTTPWILPEDLDTGTNSAYTNGLNGNLTVESHEQKLHELNTLDWDDLVASNANIPTIPNGGNEPSFYQLNQSLLNGSFSNVAGNTSAEIPSFSNPTPPESGISHVSYSFPESVNLQKNHPMTFGGVDSVEDTLVNEGLQNQNSFGMWMNNAITDTPCSVEASALESSIPSSVHDPFSSLLMDNNQQSSLPEQVFHLTDVAPAWASSTEKTKVLVTGYFHNDYRHLAKSNLVCVCGETSVPVEIVQVGVYRCWVSPHSPGFVNLYLSFDGHKPISQVVNFEYRTPILHDPAASMEETYNWIEFRLQMRLSNLLFTRPKTIDVFSSKVSPTALKETKKFASKTLFVSKSLIHFMKSSDANAIPYPHAKNTLFEIALKNKLREWLLERIVLGCKITEYDAQGQGVIHLCTLLGYTWAIAMFSWAGLSLDFRDKFGWTSLHWAAYNGMEKMVATLLSSGAKPNLVTDPTPQNPGGCTAADLAYMNGYDGLAAYLSEKCLVEQFNDMSLAGNISGSLVTTTNDPVNPENLTEDQMNLKDTLAAYRTTAEAAARIQAAFREHSLKLRYQAVQFISPEEEARQIVAAMKIQHAFRKFETRKSMAAAARIQYKFRSWKLRREFLNMRRQAIKIQAAFRGFQMRRDYRKILWSVGILEKVILRWRLKRKGFRGLEVNPDEEMKDEKQESDVEEDFFKTGRKQAEERVERSVVRVQAMFRSKKAQQEYSRMKMAHNQAKLELELEELINPDVDILTPKTS 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01760 914 Pfam IQ calmodulin-binding motif 784 803 IPR000048 GO:0005515
Tsu07g01760 914 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Tsu07g01760 914 ProSiteProfiles IQ motif profile. 759 788 IPR000048 GO:0005515
Tsu07g01760 914 ProSiteProfiles IQ motif profile. 782 806 IPR000048 GO:0005515
Tsu07g01760 914 SUPERFAMILY E set domains 360 446 IPR014756 -
Tsu07g01760 914 MobiDBLite consensus disorder prediction 148 169 - -
Tsu07g01760 914 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 15 908 - -
Tsu07g01760 914 Gene3D - 527 663 IPR036770 -
Tsu07g01760 914 Gene3D Immunoglobulins 354 449 IPR013783 -
Tsu07g01760 914 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Tsu07g01760 914 SUPERFAMILY Ankyrin repeat 530 658 IPR036770 -
Tsu07g01760 914 ProSiteProfiles IQ motif profile. 706 735 IPR000048 GO:0005515
Tsu07g01760 914 SMART CG_1_2 28 146 IPR005559 GO:0003677
Tsu07g01760 914 Coils Coil 875 895 - -
Tsu07g01760 914 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 908 - -
Tsu07g01760 914 SMART ANK_2a 634 665 IPR002110 GO:0005515
Tsu07g01760 914 SMART ANK_2a 595 624 IPR002110 GO:0005515
Tsu07g01760 914 ProSiteProfiles Ankyrin repeat profile. 595 627 IPR002110 GO:0005515
Tsu07g01760 914 ProSiteProfiles IQ motif profile. 863 891 IPR000048 GO:0005515
Tsu07g01760 914 ProSiteProfiles Ankyrin repeat region circular profile. 595 623 - -
Tsu07g01760 914 Gene3D - 760 806 - -
Tsu07g01760 914 SMART iq_5 739 761 IPR000048 GO:0005515
Tsu07g01760 914 SMART iq_5 781 803 IPR000048 GO:0005515
Tsu07g01760 914 SMART iq_5 861 883 IPR000048 GO:0005515
Tsu07g01760 914 SMART iq_5 705 727 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01760 Tsu-Chr7 17361874 17369546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01760 29 895 CAMTA Transcription Factor Family AT3G16940 55.517 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Tsu07g01760 CG-1 7.2e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01760 K21596 - gmx:100819198 1358.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01760 07 17361874 17369546 Tsu07g01760 07 17361874 17369546 ECH
Tsu04g04295 04 51040669 51048956 Tsu07g01760 07 17361874 17369546 PCT