Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01723 ATGTCTTCAACTAGTAAAATAGCTGAAACCAAcacaaatgcaaatgcaaatccAAATGCATCATCTTCAATTTCACACCAACAACACCAACTTCAAATCGTAACCGccacaaaaaaccaaaacaacaataacaaactcaaatcatcatcatcaatgaaAAAGGCCATAGCACAATACACCGAAGACGCAAGACTTCACGCTGTTTTCGAGCAATCCGGTGATTCTTTCGATTACACTCAATCAATTCGTGTAACTGCCAATCCAACTGAATCTGTTCCTGAACAACAAATAACCGCTTATTTATCTAGAATTCAACGTGGCGGTTTTATTCAACCTTTTGGTTCAATGATCGCTGTTGATGAACCTTCTTTTCGTGTTCTTGCTTATTCTGAAAACGCACGTGATATGCTTGGTATTGCTCCTCAATCAGTACCTTCACTTGAAGATGATGAACCTTTTAATTCTAGTTTTTGTTTAGGTATTGATGTTCGTTCACTTTTTACTAATTCGAGCTCAATTTTGATCGAAAAAGCTTTCGCTGCTCGCGAAATTAGTTTAATGAATCCTATTTGGATTCATTCTAGATCTACTGGTAAACCTTATTATGGAATTCTTCATAGGATTGATGTTGGTGTTGTTATTGATTTGGAACCTGCTAGATCTGAGGATCCAGCACTTTCGATTGCTGGTGCTGTTCAGTCTCAGAAGCTTGCTGTGCGAGCGATTTCGCAGCTTCAGTCACTTCCTGGTGGTGATGTTAAGGTTTTGTGCGATACTGTTGTTGAGAGTGTTAGAGAATTGACTGGTTATGATAGGGTTATGGTTTATAAGTTTCATGAGGATGAACATGGTGAAGTTGTTGCTGAAAGTAAGAGGATTGATTTGGAGCCGTATATTGGTTTGCATTATCCTGCTACTGATATACCTCAGGCTTCGAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTAATGCTTCACCTGTTAGGGTTTTTCAAGATGAGAAACTTGTTCAGCCTGTTTGTTTGGTTGGGAGTACTCTTCGTGCACCTCACGGTTGTCATGCTCAGTATATGGCGAATATGGGTTCTATTGCTTCTTTGGCTATGGCTGTTATTATTAATGGGAATGATGGAGAGAGTGGTGGGATTGGTGGTACTGGAAGAAGTTCTATGAAACTTTGGGGTCTTGTTGTTTGTCATCATACTTCTGCTAGGTGTATTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAATGCAGGCTTTTGGGCTTCAATTGAATATGGAGCTTCAGTTAGCCGTGCAGTCGTTGGAGAAGCGGGTTTTGAGGACGCAGACTTTGTTGTGTGATATGTTACTTAGGGATTCTCCTACTGGGATTATTACGCAGAGTCCTAGTATTATGGACTTGGTTAAGTGTGACGGGGCTGCTTTGTATTATCAGGGAAACTACTATCCGTTGGGTGTTACTCCGACGGAGTCTCAGATAAGGGATATTATAGAGTGGTTGTTGGCCTTCCATGGTGATTCGACGGGTTTGAGTACTGATAGTTTGGCTGATGCTGGCTATCCTGGGGCTGCTTCTCTTGGGGATGCAGTTTGTGGGATGGCTGTTGCGTATATCACTGAAAAGGATTTTCTTTTCTGGTTCAGATCTCATACGGCAAAAGAGATTAAATGGGGTGGTGCAAAGCATCATCCGGAGGATAAGGATGATGGGCAGAGAATGCATCCTCGTTCTTCGTTCAAGGCCTTTTTAGAAGTAGTGAAGAGCCGTAGTATGCAGTGGGAGAATGCAGAAATGGATGCAATTCACTCCTTGCAGCTTATCCTGCGAGACTCATTTAAGGAAGCCGAGAATAACGATTCAAAGGCTGTTGTGCATACCCATATGGCAGAACTAGAGTTGCAGGGGGTGGATGAACTGAGTTCTGTGGCTAGAGAAATGGTCAGGTTGATAGAAACTGCCACTGCTCCCATATTTGCTGTTGATGTCGAAGGCCGTATCAATGGGTGGAATGCCAAGGTTTCTGAATTGACGGGACTTCTAGTAGAGGAGGCCATGGGCAAGTCTTTGGTTCATGATCTTGTGTATAAGGAGTCTCAAGAAATTGTTGACAAGCTTCTTTCTCATGCTTTAAAAGGTGAAGAAGATAagaatattgaaataaaaatgaagacGTTTGGACCAGGGAATCAAAATAAGGCAGTTTTTATAGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGGTCAAAAGGTTGTAATGGACAAATTCATTAACATTCAAGGTGACTACAAGGCTATTGTACATAGTCCAAATGCATTGATCCCTCCCATTTTTGCATCGGATGATAACACATGTTGCTTAGAGTGGAACAATGCTATGGAAAAGCTCAGTGGTTGGAGCCGTGCAGATGTTATTGGCAAATTGTTGGTGGGAGAGGTTTTTGGTAGTTTCTGTCAGTTGAAAGGTTCAGATTCTATGACAAAATTCATGATTGTCTTGCACAATGCACTTGGTGGACAAGACACGGACAAATTCCCATTTTCATTTCTTGACCGGCATGGAAAGTATGTGCAGACTTTCTTGACCGCAAATAAAAGGATTAACATTGATGGTCAGATCATTGGCGCTTTTTGCTTCTTACAAATTGTGAGCCCTGAACTTCAACAGGCTCTGACAGTCCAGAGGCAACAGGATACTAGTAGCTTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAAAATCCCTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGTCTACATGCCTGACTGATGAGCAAAAGCAGTTACTTGAGACTAGTGCTGCTTGCGAGAAGCAAATGTTAAAGATAATACGGGACATTGATCTGGAAAGCATCGAGGATGGGTCCCTGGAGCTTGAGAAGCGGGAATTCTTGCTCGAGAATGTCATAAATGCAGTTGTTAGCCAAGTAATGTTATTGCTAAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTCTATGGTGATCAATTGAGGATTCAACAAGTCTTGGCTGATTTCTTAATGAATGTGGTGCGCTATGCACCATCTCCAGATGGTTGGGTAGAGATTCATGTGTTTCcaagaataaaacaaatttcaGACGGGCTTACTATTCTGCATGCTGAATTTAGGATGGTGTGTCCTGGTGAAGGTCTCCCACCTGAATTGATTCAAGACATGTTCCATAACAGTCGGTGGGTGACTCAAGAAGGCTTAGGACTGAGCATTAGCAGGAAGATAATAAAATCAATGAATGGTGAAGTCCAATATGTCAGGGAGGCAGAACGGTGCTACTTTTTGGTTCTTCTTGAACTACCTGTGACGCGAAGAAGCTCTAAAATTGTTAATTAG 3477 0.4032 MSSTSKIAETNTNANANPNASSSISHQQHQLQIVTATKNQNNNNKLKSSSSMKKAIAQYTEDARLHAVFEQSGDSFDYTQSIRVTANPTESVPEQQITAYLSRIQRGGFIQPFGSMIAVDEPSFRVLAYSENARDMLGIAPQSVPSLEDDEPFNSSFCLGIDVRSLFTNSSSILIEKAFAAREISLMNPIWIHSRSTGKPYYGILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKVLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRIDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNASPVRVFQDEKLVQPVCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDGESGGIGGTGRSSMKLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAVQSLEKRVLRTQTLLCDMLLRDSPTGIITQSPSIMDLVKCDGAALYYQGNYYPLGVTPTESQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSMQWENAEMDAIHSLQLILRDSFKEAENNDSKAVVHTHMAELELQGVDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVSELTGLLVEEAMGKSLVHDLVYKESQEIVDKLLSHALKGEEDKNIEIKMKTFGPGNQNKAVFIVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNALIPPIFASDDNTCCLEWNNAMEKLSGWSRADVIGKLLVGEVFGSFCQLKGSDSMTKFMIVLHNALGGQDTDKFPFSFLDRHGKYVQTFLTANKRINIDGQIIGAFCFLQIVSPELQQALTVQRQQDTSSFARMKELAYICQEVKNPLSGIRFTNSLLESTCLTDEQKQLLETSAACEKQMLKIIRDIDLESIEDGSLELEKREFLLENVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLMNVVRYAPSPDGWVEIHVFPRIKQISDGLTILHAEFRMVCPGEGLPPELIQDMFHNSRWVTQEGLGLSISRKIIKSMNGEVQYVREAERCYFLVLLELPVTRRSSKIVN 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01723 1158 Gene3D PAS domain 644 777 - -
Tsu07g01723 1158 Pfam GAF domain 252 434 IPR003018 GO:0005515
Tsu07g01723 1158 Gene3D - 439 612 IPR043150 -
Tsu07g01723 1158 SMART pas_2 782 852 IPR000014 -
Tsu07g01723 1158 SMART pas_2 651 718 IPR000014 -
Tsu07g01723 1158 Pfam PAS fold 99 219 IPR013654 GO:0006355
Tsu07g01723 1158 SUPERFAMILY GAF domain-like 232 431 - -
Tsu07g01723 1158 SMART HisKA_10 924 988 IPR003661 GO:0000155|GO:0007165
Tsu07g01723 1158 ProSiteProfiles Histidine kinase domain profile. 931 1151 IPR005467 -
Tsu07g01723 1158 ProSiteProfiles PAS repeat profile. 649 720 IPR000014 -
Tsu07g01723 1158 SMART gaf_1 252 444 IPR003018 GO:0005515
Tsu07g01723 1158 Gene3D - 907 987 - -
Tsu07g01723 1158 CDD PAS 660 767 IPR000014 -
Tsu07g01723 1158 ProSitePatterns Phytochrome chromophore attachment site signature. 352 361 IPR013516 -
Tsu07g01723 1158 PIRSF Phytochrome_conventional 32 1156 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Tsu07g01723 1158 SUPERFAMILY GAF domain-like 442 620 - -
Tsu07g01723 1158 MobiDBLite consensus disorder prediction 1 31 - -
Tsu07g01723 1158 Gene3D - 233 595 IPR029016 -
Tsu07g01723 1158 Pfam Phytochrome region 447 622 IPR013515 GO:0006355|GO:0009584
Tsu07g01723 1158 CDD HATPase_Phy-like 1035 1147 IPR044767 -
Tsu07g01723 1158 Gene3D PAS domain 103 355 - -
Tsu07g01723 1158 PRINTS Phytochrome signature 167 189 IPR001294 GO:0006355|GO:0009584
Tsu07g01723 1158 PRINTS Phytochrome signature 267 286 IPR001294 GO:0006355|GO:0009584
Tsu07g01723 1158 PRINTS Phytochrome signature 352 373 IPR001294 GO:0006355|GO:0009584
Tsu07g01723 1158 PRINTS Phytochrome signature 464 484 IPR001294 GO:0006355|GO:0009584
Tsu07g01723 1158 PRINTS Phytochrome signature 549 568 IPR001294 GO:0006355|GO:0009584
Tsu07g01723 1158 PRINTS Phytochrome signature 582 600 IPR001294 GO:0006355|GO:0009584
Tsu07g01723 1158 PRINTS Phytochrome signature 652 668 IPR001294 GO:0006355|GO:0009584
Tsu07g01723 1158 PRINTS Phytochrome signature 671 686 IPR001294 GO:0006355|GO:0009584
Tsu07g01723 1158 PRINTS Phytochrome signature 745 762 IPR001294 GO:0006355|GO:0009584
Tsu07g01723 1158 PRINTS Phytochrome signature 765 785 IPR001294 GO:0006355|GO:0009584
Tsu07g01723 1158 SUPERFAMILY PYP-like sensor domain (PAS domain) 104 223 IPR035965 -
Tsu07g01723 1158 SUPERFAMILY PYP-like sensor domain (PAS domain) 654 763 IPR035965 -
Tsu07g01723 1158 Gene3D - 988 1154 IPR036890 -
Tsu07g01723 1158 PANTHER PHYTOCHROME 27 1152 - -
Tsu07g01723 1158 Gene3D PAS domain 796 906 - -
Tsu07g01723 1158 TIGRFAM sensory_box: PAS domain S-box protein 656 771 IPR000014 -
Tsu07g01723 1158 PANTHER TWO-COMPONENT HISTIDINE KINASE 27 1152 - -
Tsu07g01723 1158 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 999 1148 IPR036890 -
Tsu07g01723 1158 CDD HisKA 924 980 IPR003661 GO:0000155|GO:0007165
Tsu07g01723 1158 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1036 1142 IPR003594 -
Tsu07g01723 1158 ProSiteProfiles PAS repeat profile. 783 835 IPR000014 -
Tsu07g01723 1158 Pfam PAS fold 783 902 IPR013767 GO:0006355
Tsu07g01723 1158 Pfam PAS fold 652 767 IPR013767 GO:0006355
Tsu07g01723 1158 Pfam His Kinase A (phospho-acceptor) domain 928 988 IPR003661 GO:0000155|GO:0007165
Tsu07g01723 1158 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 252 424 IPR016132 -
Tsu07g01723 1158 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 924 980 IPR036097 GO:0000155|GO:0007165
Tsu07g01723 1158 SUPERFAMILY PYP-like sensor domain (PAS domain) 797 900 IPR035965 -
Tsu07g01723 1158 CDD PAS 794 902 IPR000014 -
Tsu07g01723 1158 SMART HKATPase_4 1036 1151 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01723 Tsu-Chr7 16962768 16969577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01723 9 1149 Histidine Kinase Gene Family AT4G16250 72.125 0.0 1751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01723 K12121 - gmx:100799831 1943.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01723 07 16962768 16969577 Tsu07g01723 07 16962768 16969577 ECH