Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01664 atgGAAGTGAAAGGAAGTGTAATTAGCAACTCAAACATCACCATGCTCCAAAATGAGGATATTGATGAGTTGGATCTTCGACGAGGTCCATGGACCGTTGATGAAGATCTTGCTCTCATCAATTACATTGCAAATCACGGTGAAGGTCGATGGAACACCCTTGCTCGTTCAGCCGGACTCAAGAGAACTGGCAAGAGCTGTAGATTGAGATGGTTGAATTATCTTCGTCCAGATGTTCGACGTGGTAACATCACACTCGAAGAACAACTTCTTATTCTTGAACTTCATAGTCGTTGGGGAAACCGATGGTCAAAAATTGCTCAATATTTGCCGGGAAGAACAGACAACGAAATCAAGAATTATTGGAGGACGCGTGTTCAAAAACATGCTAAACAACTCAAATGTGACGTGAATAGCAAACAATTCAAAGATGCCATGCGCTACCTTTGGATGCCAAGGTTAGTGGAGCGAATCCAAGCCGCTGCATCAACCTCTACCGCCACAACCACCACCACTAATAATTATGGTTCTCCAAGTGTTACAACAACGGTCACCACCAACAATCCAACATACAACCATAACAACAATTTCGAGGTTCATACTAATATGATGTTAACTCCAACAATTAtgaataacaacaacaacaacaataacttATGTGGTTCGCAAGTGACACAAAGTTATACTCCGGATAATAGTAGCAATGGTGCGGCCGCATCATCAGATTCGTTTGGAACACAAGTTTCGCCTATCTCAGAATTGACTCAAGATTATTACAATGTCGCGGTTGGTAGTAACAACGGTAACAATAACCCTAATTCTGATTATTACCAACAAGCTCAACAATTTGGCTTTGATTGTATCACTAGCCCATCAGGTTTGTTCCCTCAAATGGATTTCAATTCCATGGAACCAAACACTCCATGGATTCAAGGGGACACATCCGACAATTTCTGGAATGTTGAAAACATGTTGCTCTTTCAACAACTCAATGACAACATGTGA 1005 0.404 MEVKGSVISNSNITMLQNEDIDELDLRRGPWTVDEDLALINYIANHGEGRWNTLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAASTSTATTTTTNNYGSPSVTTTVTTNNPTYNHNNNFEVHTNMMLTPTIMNNNNNNNNLCGSQVTQSYTPDNSSNGAAASSDSFGTQVSPISELTQDYYNVAVGSNNGNNNPNSDYYQQAQQFGFDCITSPSGLFPQMDFNSMEPNTPWIQGDTSDNFWNVENMLLFQQLNDNM 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01664 334 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Tsu07g01664 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 75 IPR017930 -
Tsu07g01664 334 PANTHER MYB TRANSCRIPTION FACTOR 1 331 - -
Tsu07g01664 334 MobiDBLite consensus disorder prediction 214 245 - -
Tsu07g01664 334 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Tsu07g01664 334 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Tsu07g01664 334 MobiDBLite consensus disorder prediction 163 189 - -
Tsu07g01664 334 SUPERFAMILY Homeodomain-like 25 122 IPR009057 -
Tsu07g01664 334 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Tsu07g01664 334 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 331 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tsu07g01664 334 CDD SANT 30 75 IPR001005 -
Tsu07g01664 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
Tsu07g01664 334 SMART sant 27 77 IPR001005 -
Tsu07g01664 334 SMART sant 80 128 IPR001005 -
Tsu07g01664 334 Gene3D - 85 148 - -
Tsu07g01664 334 CDD SANT 101 124 IPR001005 -
Tsu07g01664 334 Gene3D - 25 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01664 Tsu-Chr7 15814317 15816350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01664 24 178 MYB Transcription Factor Family AT1G48000 74.194 6.14e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu07g01664 Myb_DNA-binding 5.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01664 K09422 - gmx:100805341 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01664 07 15814317 15816350 Tsu07g01664 07 15814317 15816350 ECH